DRSC/TRiP Functional Genomics Resources

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Protein Alignment Crag and Dennd5a

DIOPT Version :9

Sequence 1:NP_001162710.2 Gene:Crag / 31800 FlyBaseID:FBgn0025864 Length:1671 Species:Drosophila melanogaster
Sequence 2:NP_001101016.2 Gene:Dennd5a / 308942 RGDID:1306759 Length:1287 Species:Rattus norvegicus


Alignment Length:1358 Identity:277/1358 - (20%)
Similarity:465/1358 - (34%) Gaps:453/1358 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 PKHISYKPEILLRYP-TFDHTDFPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFV 261
            |...::|.::|.||| ..|...|..:   :|.:.|:|.|.:.:.        :..|..|.|..|:
  Rat    68 PLRRTFKSKVLARYPENVDWNPFDQD---AVGMLCMPKGLAFKT--------QADPREPQFHAFI 121

  Fly   262 LTVSDGTYKVYGSALTFYEDYDESKLSAEQKELL----------------GWDE---EFG----- 302
            :|..||: :.:|.||||||:....::.:..:.|.                |.|:   |.|     
  Rat   122 ITREDGS-RTFGFALTFYEEVTSKQICSAMQTLYHMHNAEYDVLHAPLADGGDQSGMEDGEGIPG 185

  Fly   303 -----------AQHSLHMIKAICLLSHHPFGDTFDKWLKYLHRMVLYDVNIPIPVERYITQLLDE 356
                       ::.:|::.|.|||::...|.......|:.||:.|......|:|:|.||..:|.|
  Rat   186 TKLQRFNSYDISRDTLYVSKCICLITPMSFMKACRSVLQQLHQAVTSPQPPPLPLESYIYNVLYE 250

  Fly   357 VPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAGFHILLQNLGTDNCLHVLLLALTEQKILIH 421
            ||.|.|...|:.|..... |:..:|..:.||........:.:.||.:|...:...||.|.:||::
  Rat   251 VPLPPPGRSLKFSGVYGP-IICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALLEFQILLY 314

  Fly   422 SLRPATLTAVAEAIVSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIG----------------- 469
            |.....|..|||.|.:|:|||:||..|:|:.|..|...|.||:|||:|                 
  Rat   315 SQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQE 379

  Fly   470 -------VDSRFFDLYE-------------------------PPTDVTCID-------------- 488
                   ||:.|.:|.|                         |..::.|.:              
  Rat   380 ANLCFVDVDNHFIELPEDLPQFPNKLEFVQEVSEILMAFGVPPEGNLHCSESASKLKRIRASELV 444

  Fly   489 LDTNNISLCESQRHLSPKLLPK-----RAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKREL 548
            .|..|.::..|..| |.:||.:     |...|:::|...||..: :..|.:::.|..::..:.||
  Rat   445 SDKKNGNIAGSPLH-SYELLKENETIARLQALVKRTGVSLEKLE-VREDPSSNKDFKVQCDEEEL 507

  Fly   549 VLEQ---RIQEAFLLFMASILRGYRDFLVPIS--KAPSVGATDPSALFQLKAFLRSRDKSHQKFF 608
            .:.|   :|:|.|......:...|..|::..|  |...:...:....|...:||..:.:.:..|.
  Rat   508 RIYQLNIQIREVFANRFTQMFADYEVFVIQPSQDKESWLSNREQMQNFDKASFLSDQPEPYLPFL 572

  Fly   609 ELMMKTQMFIRFIEERSFVSDGDH-------------------------GLSFFDEC-----AEK 643
            ...::||||..||:.:....|.|.                         ..|.:.:|     |||
  Rat   573 SRFLETQMFASFIDNKIMCHDDDDKDPVLRVFDSRVDKIRLLNVRTPTLRTSMYQKCTTVDEAEK 637

  Fly   644 -----VGNYDETPAQLHLVDWDTGQNSERTKYIFPPDSVTPAGSQPGGGGGGLAYNYENFTLQPE 703
                 :...|.|....||:|...||.    ||            :||                  
  Rat   638 AIELRLAKIDHTAVHPHLLDMKIGQG----KY------------EPG------------------ 668

  Fly   704 LLQSTKKTALSKFLQLQLNASLSPGSPIARRTKHEIKLSQKMASRCQQHPE-------AWSKYLL 761
                       .|.:||.:. |..|....:.||.......:...|.:||.|       ...||  
  Rat   669 -----------FFPKLQSDV-LCTGPASNKWTKRNAPAQWRRKDRQKQHTEHLRLDNDQREKY-- 719

  Fly   762 ATCYSLYFLILPSMVLDPRHAG---KEPEILRAAYDVLVRAS-----RLKITCDEFCYRIMMQLC 818
                          :.:.|:.|   ::|::...:..|:.:.:     .|...|.....|::::..
  Rat   720 --------------IQEARNMGSTIRQPKLSNLSPSVIAQTNWKFVEGLLKECRNKTKRMLVEKM 770

  Fly   819 GIHNLPVLAVRL-HYLMKRSGVQANALTYGFYNRCVLESQW------PQDSTTISQIRW------ 870
            |..     ||.| |..:..:||:.|.|.....:  :||..|      .|..:.:    |      
  Rat   771 GRE-----AVELGHGEVNITGVEENTLIASLCD--LLERIWSHGLQVKQGKSAL----WSHLLHY 824

  Fly   871 --NRIKNVVLGA---------AQFRKAGKQRAASKVNKSLSASQD----QNLSTLETVDGQSRTS 920
              ||.:.:..|:         ::.||:......|.:..||  .||    ||:..::|..|::|..
  Rat   825 QENRQRKLTSGSLSTSGILLDSERRKSDASAVMSPLRVSL--IQDMRHIQNIGEIKTDVGKARAW 887

  Fly   921 LASS----------------------------------SGDGGGHGLLDFAAFDR--LRNKLGS- 948
            :..|                                  ..:...:.||.|.|.|.  ..|...: 
  Rat   888 VRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCDDEKEQFLYHLLSFNAVDYFCFTNVFTTI 952

  Fly   949 -------IVRQTVTGGNNETMGDAVNNTGLLIPGELSAPNTPTYGGDTEILAKALQQQQPRK--- 1003
                   ||.....||:..|.     |..:.|.|||         |:|:||      |.||.   
  Rat   953 LIPYHILIVPSKKLGGSMFTA-----NPWICISGEL---------GETQIL------QIPRNVLE 997

  Fly  1004 ---------QIMSIGGGDDD---------DEDEDEDEYTAGSPSTP-QKQLEAGADDLEYAGGGD 1049
                     ::.::..|.|:         :.....:|.|..:...| .:.|..|.||      |.
  Rat   998 MTFECQNLGKLTTVQIGHDNSGLYAKWLVEYVMVRNEITGHTYKFPCGRWLGKGMDD------GS 1056

  Fly  1050 YEADEEDE-----DEVDEHVAAQRARQRVQSPTKISPRTPVTQND--PLGALNEEESAASAT--- 1104
            .|.....|     .||||...  |.....|||:.|.....::.|:  .|.....:||...|.   
  Rat  1057 LERVLVGELLTSLPEVDERPC--RTPPLQQSPSVIRRLVTISPNNKPKLNTGQIQESIGEAVNGI 1119

  Fly  1105 ------PTQE-----------------TQQEQQHSQSQIDSSIYSDKPILFRG-------QRSAT 1139
                  |.:|                 .:|..||.         ...|.||:.       :::.|
  Rat  1120 VKHFHKPEKERGSLTLLLCGECGLVSALEQAFQHG---------FKSPRLFKNVFIWDFLEKAQT 1175

  Fly  1140 FDESTQIGKSMHRSETMPVAS------------SGVTNSLANIGSSLKFTFGRYSPAR------- 1185
            :.|      ::.:::.:|..:            :.|.|:..|||...||.......||       
  Rat  1176 YYE------TLEQNDVVPEENWHTRARNFCRFVTAVNNTPRNIGKDGKFQMLVCLGARDHLLHHW 1234

  Fly  1186 LSLKKDLKLPANIIENISSISPSLTGKKSNELIQGSLSSIKSAAN-SLTKKFDEIKGV 1242
            ::|..|..:.|::.|:::.|       |.:.|:...:..:::... ::|.....:||:
  Rat  1235 IALLADCPITAHMYEDVALI-------KDHTLVNSLIRVLQTLQEFNITLDTSLVKGI 1285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CragNP_001162710.2 uDENN 189..279 CDD:214824 23/81 (28%)
DENN 308..492 CDD:307995 65/246 (26%)
dDENN 551..624 CDD:129037 18/77 (23%)
PPR repeat 808..837 CDD:276811 6/29 (21%)
Dennd5aNP_001101016.2 uDENN 12..138 CDD:214824 23/81 (28%)
DENN 202..390 CDD:307995 59/188 (31%)
dDENN 513..588 CDD:129037 17/74 (23%)
RUN 795..942 CDD:322053 25/154 (16%)
PLAT_RAB6IP1 954..1062 CDD:238855 28/133 (21%)
RUN 1143..1278 CDD:322053 26/156 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2127
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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