DRSC/TRiP Functional Genomics Resources

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Protein Alignment Crag and lst-6

DIOPT Version :9

Sequence 1:NP_001162710.2 Gene:Crag / 31800 FlyBaseID:FBgn0025864 Length:1671 Species:Drosophila melanogaster
Sequence 2:NP_001367509.1 Gene:lst-6 / 174146 WormBaseID:WBGene00016889 Length:1487 Species:Caenorhabditis elegans


Alignment Length:1011 Identity:210/1011 - (20%)
Similarity:334/1011 - (33%) Gaps:350/1011 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 SVRTTDCYI----YFRRGKDRPPLVDIGVLYD-----GHERIMSDAEIVAETPGGRVANVNNSSA 133
            |..|||..:    ||......|   |||::.|     ||        ...|:||        |||
 Worm     2 SSNTTDIDVTLVDYFAVAGYDP---DIGLVVDTKYDPGH--------TPCESPG--------SSA 47

  Fly   134 KTFLTYRRARADMPCNELVVTELCVIVQSKGERAPHAFCLIYKTLNKGYVGSDVYLCYKKSMYRP 198
            ..|                             |.|         |.:.:|.              
 Worm    48 PEF-----------------------------RPP---------LQRSFVA-------------- 60

  Fly   199 KHISYKPEILLRYPTFDHTDFPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFVLT 263
            |.|::.|:   |.|....:|..|:|       |:|.|....       |||..|...:..||...
 Worm    61 KIINHFPQ---RRPGNPFSDDILHL-------CMPRGLRFY-------TEKDVPKKLMIHTFANI 108

  Fly   264 VSDGTYKVYGSALTFYEDYDE---------------SKLSAEQKELLGWDE-------------- 299
            ..||: ::.|:||||||:..:               .:::|....::...:              
 Worm   109 KEDGS-RINGTALTFYEEVKDLAICDAMAQLQQDHVREITARHNGIIEKQQRIHHPPGTVSGGTH 172

  Fly   300 ----------------EFGAQHSLHMIKAICLLSHHPFGDTFDKWLKYLHRMVLYDVNIPIPVER 348
                            |.|..:||:|.:.||:||..|..::....|..||:::....:..:|:|.
 Worm   173 TLPRNRRDRSKRISYYEGGGHNSLYMSRTICVLSRLPLVNSTRALLTALHQIIASPSSPHLPLES 237

  Fly   349 YITQLLDEVPFPAPSIHLQLSSESNDRILLTQPEDSPLPRSGAGFHILLQNLGTDNCLHVLLLAL 413
            ||...|.|||.|:||:.|::.. ....:::.:|....||........:...|..:..:.:....|
 Worm   238 YIYWCLYEVPLPSPSMTLKIPL-LGTTLVVQRPGPKELPFFDDSIGSIFDYLPVEKFIRLFSCFL 301

  Fly   414 TEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIG---VDSRFF 475
            .|.:||:.|...:.|..|.|::::|.|||:||..|.|:.|....:...||:||::|   .|:...
 Worm   302 LEHQILLCSKDLSRLMTVCESLLALSFPFRWQMTYAPVLPYSKLDFFEAPVPYVMGWYYEDTVPE 366

  Fly   476 DLYEPPTDVTCIDLDTNNISLCE------SQRHL-------------SPKLLP------------ 509
            :|::  ::|..:||||....|.|      ..|.|             |.|:|.            
 Worm   367 ELFQ--SNVCVVDLDTGRSELPEDVPVFPGARQLATDIKNSLERLSDSDKMLTSTLDRSEPEEVV 429

  Fly   510 ----------KR----AARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVLE--------- 551
                      ||    ||:.:.::. :||:...:|.:.:..:.|..|...:.|.||         
 Worm   430 VGGVKMRRKNKRPEDWAAKRMSRSF-DLEDGSAMSEELSGMMRRPSRTGLQPLPLENVLRNNSTL 493

  Fly   552 --------------------------------------------QRIQEAFLLFMASILRGYRDF 572
                                                        ..|:|..|.....:...|..|
 Worm   494 ARVAEIARRAGVVVDVDNIKSEFADAQNLDSPIARHYFVDAKVNNAIRECVLNRFVEMFYSYEHF 558

  Fly   573 LVPISKAPSVGATD---------PSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEER--SF 626
            ::     ...|..|         ..|.|...:||..:..||..|....::||||..||:.:  |.
 Worm   559 VI-----GGQGCDDRESYEANRESMADFDKASFLSDQPDSHLTFLAAFLETQMFTSFIDSKILSQ 618

  Fly   627 VSDGDHGLSFFDE-----------CAEKVGNYDETP---AQLHLVDWDTGQNSERTKYIFPPDSV 677
            ....|.|:..||.           ...:...|:.||   |...|:    .:..|.|.|:.|... 
 Worm   619 WETPDEGVVLFDSRISAMRDLLGVSIVRTPTYEATPPFAATEDLI----SKREETTDYVVPVPH- 678

  Fly   678 TPAGSQPGGGGGGLAYNYENFTLQPELLQSTKKTALSKFLQLQLNASLSPGSPIARRTKHEIKLS 742
            |.||:.|....|....:..|.||..                   .|:|...:|...|.::....|
 Worm   679 TLAGAFPVRYEGAWPVHQLNTTLLD-------------------GANLISPAPSPWRQRYPRLRS 724

  Fly   743 QKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAG-----KEPEILRAAY---DVLVRA 799
            ||..|.......                :.|:.|..  .||     ...:|.:..|   ..|::.
 Worm   725 QKDGSNGNSGQS----------------VRPTSVYG--GAGLMQVESSKQIAQQQYAFVQQLLKE 771

  Fly   800 SRLKITCDEFCYRIMMQLCGIHNLPVLAVRLHYL-MKRSGVQANALTYGFYNRCVLESQWP---Q 860
            ::.|..      |:::...|..     ||:|.:| ...:||:.|.|...|.:  :||..|.   :
 Worm   772 TKAKTK------RMLVDKMGKE-----AVQLGHLDAGITGVEENTLVASFCD--LLERIWAHGLK 823

  Fly   861 DSTTISQIRWNRIKNVVLGAAQFRKAGKQRAASKVN 896
            :....|.: |    |.||....|.|.|....||..:
 Worm   824 NKHGKSSL-W----NFVLQHQDFEKPGLTTRASSTS 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CragNP_001162710.2 uDENN 189..279 CDD:214824 23/89 (26%)
DENN 308..492 CDD:307995 53/186 (28%)
dDENN 551..624 CDD:129037 21/134 (16%)
PPR repeat 808..837 CDD:276811 6/29 (21%)
lst-6NP_001367509.1 uDENN 11..123 CDD:214824 43/200 (22%)
DENN 199..381 CDD:214823 52/184 (28%)
dDENN 537..614 CDD:129037 20/81 (25%)
RUN 1064..1127 CDD:214736
PLAT_RAB6IP1 1134..1244 CDD:238855
RUN 1419..1479 CDD:214736
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2127
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3728
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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