DRSC/TRiP Functional Genomics Resources

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Protein Alignment Crag and Dennd3

DIOPT Version :9

Sequence 1:NP_001162710.2 Gene:Crag / 31800 FlyBaseID:FBgn0025864 Length:1671 Species:Drosophila melanogaster
Sequence 2:NP_001074535.1 Gene:Dennd3 / 105841 MGIID:2146009 Length:1274 Species:Mus musculus


Alignment Length:730 Identity:151/730 - (20%)
Similarity:275/730 - (37%) Gaps:157/730 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 AICLLSHHPFGDTFDKWLKYL--HRMVLYDVNIPIPVERYITQLLDEVPFPAPS-IHLQLSSESN 373
            |:|::|..|:.::....|..|  |..:..|..:...::.:..: |..:|.|.|. :||..:.:..
Mouse   191 AVCVVSRFPYYNSLKDCLSCLLTHLKLCKDFEVDNHIKDFAAR-LSLIPSPPPGPLHLIFNMKPL 254

  Fly   374 DRILLTQPEDSPLPRSGAGFHILLQNLGTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSL 438
             :::.....|...|......|:.|.....:..|.:|...||||:|:..|...|.||.:||..|:.
Mouse   255 -QVVFPSRADPESPIVDLDLHLPLLCFRPEKVLQILTCILTEQRIVFFSSDWALLTLMAECFVAY 318

  Fly   439 LFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPTD-VTCIDLDTNNISLCE-SQR 501
            |.|.:||..::|:....:.:.:.||..:|:|.....|:......| :..||:|..:::..: |..
Mouse   319 LHPLQWQHTFVPILSGQMLDFVMAPTSFLMGCHLDHFEEVRKEADGLVLIDIDHGSVTCSKSSDD 383

  Fly   502 HLSPKLLPKRAARLLRQTLTELENAKPISYD--------STNSLDRDIRKRKRELVLEQRIQEAF 558
            ::....:|    .||.||..:...:..:..|        ||:..:...|:|..:..|..:||...
Mouse   384 NIDIPDVP----LLLAQTFIQRVQSLQLHPDLHLAHLSASTDLNEGRARRRAWQQTLNCKIQHIT 444

  Fly   559 LLFMASILRGYRDFLVPISKAPSVGATDPSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEE 623
            |..:..|.|..::.|           .....:|..:.||::|....|:|::.::.|.||..|::.
Mouse   445 LQLLVGIFREVKNHL-----------NYEHRVFNSEEFLKTRAAGDQQFYKQVLDTYMFHSFLKA 498

  Fly   624 R------SFV-------SDGDHGLSFFDE--------CAEKVGNYDETP---------------- 651
            |      :|.       |:.|.    .|.        ..||:.:...:|                
Mouse   499 RLNGRMDAFARMDLDTQSEEDR----IDRMLISPRRPTVEKMASRKASPLHITHRRMVVSMPNLQ 559

  Fly   652 -----------AQLHLVDWDTGQNSE-------RTKYIFP-PDSVTPAGSQ-------------- 683
                       :.|.::|....::|.       ::.|:|. ||...|..||              
Mouse   560 DISLPELPPRNSSLRIMDTSNCRSSSPVLKVTPKSTYMFKIPDIHFPLESQCVQAYYTDFVTLLS 624

  Fly   684 -----PGGGGGGLAYNYENFTLQP--ELLQSTKKTALSKFLQL-QLNASLSPGSPIARRTKHEIK 740
                 .|.|...|...|  |.|:.  .|:|....:||..|..| :.:..:.| :.:.:||...:.
Mouse   625 KAMALLGPGDSLLLARY--FYLRGLLHLMQGQLLSALLDFQNLYKTDIGIFP-ADLVKRTVESMS 686

  Fly   741 LSQKMASRCQQHPEAWSKYLLATCYSLYFLILPSMVLDPRHAGKEPEILRAAYDVLVRASRLKIT 805
            .|::  ::.::.||            |..||  :.|.| :| |:.|:...|..:..:....::: 
Mouse   687 ASER--AQAERTPE------------LRRLI--TEVFD-KH-GEAPKADDAVKNFELPKKHMQL- 732

  Fly   806 CDEFCYRIMMQLCGIHNLPVLAVRLHYLMKRSGVQANALTYGFYNRCVLESQWPQDSTTISQIRW 870
             ::|..|:  |..||....|:..||.          :|||:|...:  ::.:..:|..|..:...
Mouse   733 -NDFVKRV--QESGIVKDAVIIHRLF----------DALTFGHEKQ--IDPETFRDFYTCWKETE 782

  Fly   871 NRIKNVVLGAAQFRKAGKQRAASKVNKSLSASQDQNLSTLETVDGQSRTSLASSSGDGGGHGLLD 935
            ...:.|.|.|.......|.....|    ||:|...|....:....|.|..|.:.    |..|.::
Mouse   783 AEAQEVSLPALLMEHLDKNECVYK----LSSSVKTNRGVGKIAMTQKRLFLLTE----GRPGYVE 839

  Fly   936 FAAFDRLRNKLGSIV 950
            .|.|..:.....|.|
Mouse   840 IATFRNIEEVKNSTV 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CragNP_001162710.2 uDENN 189..279 CDD:214824
DENN 308..492 CDD:307995 46/183 (25%)
dDENN 551..624 CDD:129037 16/72 (22%)
PPR repeat 808..837 CDD:276811 8/28 (29%)
Dennd3NP_001074535.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 65..108
DENN 187..373 CDD:280329 46/183 (25%)
dDENN 437..499 CDD:129037 16/72 (22%)
Linker. /evidence=ECO:0000305 520..970 73/384 (19%)
DUF4401 <615..645 CDD:291049 5/31 (16%)
WD 1. /evidence=ECO:0000255 975..1013
WD40 <999..1274 CDD:225201
WD 2. /evidence=ECO:0000255 1019..1055
WD40 1021..1274 CDD:295369
WD40 repeat 1030..1065 CDD:293791
WD 3. /evidence=ECO:0000255 1059..1099
WD40 repeat 1072..1118 CDD:293791
WD 4. /evidence=ECO:0000255 1103..1140
WD 5. /evidence=ECO:0000255 1146..1181
WD 6. /evidence=ECO:0000255 1186..1228
WD40 repeat 1200..1240 CDD:293791
WD 7. /evidence=ECO:0000255 1234..1273
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831218
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2127
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12296
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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