DRSC/TRiP Functional Genomics Resources

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Protein Alignment Crag and sbf1

DIOPT Version :9

Sequence 1:NP_001162710.2 Gene:Crag / 31800 FlyBaseID:FBgn0025864 Length:1671 Species:Drosophila melanogaster
Sequence 2:XP_012813917.1 Gene:sbf1 / 100125154 XenbaseID:XB-GENE-1013544 Length:1923 Species:Xenopus tropicalis


Alignment Length:1239 Identity:263/1239 - (21%)
Similarity:451/1239 - (36%) Gaps:320/1239 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 ILLRYPTFDHTDFPLNLCPSVPLFCLPMGASLEAWPHVNGTEKRKPISPVFSTFVLTVSD-GTYK 270
            ||.|:|..|..|.|..  ..:.|||.|.|..|       .|||:.|     :.|:..::| .:.:
 Frog    27 ILQRFPEKDWEDNPFP--QGIELFCQPSGWQL-------STEKKPP-----TFFIAVLTDISSER 77

  Fly   271 VYGSALTFYEDYDESKLSAEQKE-LLGWDEEFGAQHSLHMIKAICLLSH--HP--FGDTFDKWLK 330
            .|.|..||:|:.:..:...:|:: .|..|....:...|...|.:.|:|.  ||  |.|:..    
 Frog    78 HYCSCFTFW
EELENIQSLHDQRDGELEEDAPLPSTAQLCAPKTLVLVSRLDHPEVFRDSLG---- 138

  Fly   331 YLHRMVLYDVN---IPIPVERYITQLLD-EVPFPAPS-IHLQ------LSSESNDRILLTQPEDS 384
                 ::|.::   :.:.:|..|..||. .||....| ..|:      :|..:.||.::..|...
 Frog   139 -----LIYTIHTDGLSVSLENVIGNLLTCTVPVTGGSQSDLEQDTVRTISLGAGDRQVIQTPICD 198

  Fly   385 PLPRSGAGFHILLQNLGTDNCLHVLLLALTEQKILIHSLRPATLTAVAEAIVSLLFPFKWQCPYI 449
            .||.|.....:|.:.||..|.|.:...||||.|||..|.....||....|:::::||.::...|:
 Frog   199 SLPISNCSVALLFRQLGITNVLCLFCAALTEHKILFLSTSYQRLTEACRALLAIMFPLRYSFTYV 263

  Fly   450 PLCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPTDVTCIDLDTNNISL--CESQRHLSPKLL---P 509
            |:.|..|.|||..|.|::|||::.|....:...||...|||...:::  |.....|...||   .
 Frog   264 PILPAQLLEVLSTPTPFIIGVNALFRAETQELLDVVIADLDGGTVTVPECVQIPFLPEPLLHHTQ 328

  Fly   510 KRAARLLRQTLTELENAKPISYDSTNSLDRDIRKRKRELVLEQRIQEAFLLFMASILRGYRDFLV 574
            :..:::|..:|...:.|.|.|..:.::|      |.:::    .|:.:||...|.|.:|||..|.
 Frog   329 EAISQVLDPSLVIADLAFPPSSITASTL------RMQDM----EIRASFLRLFAQIFQGYRCCLQ 383

  Fly   575 PISKAPSVGATDPSALFQLKAFLRSRDKSHQKFFELMMKTQMFIRFIEERSFVSDGDHGLSFFDE 639
            .|...|     :|...|...:||..|......|...:::...|..|:.||....   ..|..|||
 Frog   384 LIRIHP-----EPVIRFHKASFLGQRGLVEDDFLTKVLEGMAFAGFVTERGAPY---RALDLFDE 440

  Fly   640 CAE---KVGNYDETPAQLHLVDWDTGQNSERTKYIFPPDSVTPAGSQPGGGGGGLAYNYENFTLQ 701
            ...   |...|::|...:.....|..:...|.:..:|  :|:....|....|..:...:..|.:.
 Frog   441 LVAYEVKKLQYEDTQQNIIKHVRDLAEKLYRNENPYP--AVSMHKVQRPAEGSYMRPQHRPFPML 503

  Fly   702 PE-LLQSTKKTALSKF------LQLQLNASLSPGSPIA----RRTKHEIKLSQKMASRCQQHPEA 755
            .| .:|.|...|.:|.      ::::....:.||.|||    |....:...::::.         
 Frog   504 DESSIQWTLDQAAAKMQHAPPTVRVEKKCMVPPGPPIAAIFERNGATQANSNRRLE--------- 559

  Fly   756 WSKYLLATCYSLYFLILPSMVLDPRHAGKEPEILRAAYDVLVRASRLKITCDEFCYRIMMQLCGI 820
                ::..|.|..|   .:.:|:.:..  .|.:|||   :..||:||.:|.:             
 Frog   560 ----VVRNCISYIF---ENKMLEAKKL--HPAVLRA---LKGRAARLCLTQE------------- 599

  Fly   821 HNLPVLAVRLHYLMKRSGVQANALTYGFYNR---CVLESQWPQD-------------------ST 863
                   :.||....|:.:...  .:.|..|   |.|:...|.|                   |:
 Frog   600 -------LNLHVQQNRAVLDHQ--QFDFVVRLMNCCLQDCTPLDEHAIAAALLPLVTAFCRKLSS 655

  Fly   864 TISQIRWNRI-KNVVLGAAQFRKAGKQRAASKVNKSLSASQDQNLSTLETVDGQSRTSLASSSGD 927
            .|:|..::.: ::||....||.:|..........::|.:|.:...:.::..:.:.|::       
 Frog   656 GITQFAYSCVQEHVVWTNMQFWEAMFYGDVQNHIRALYSSPEDTTTNMDEFEEEERSA------- 713

  Fly   928 GGGHGLLDFAAFD-RL-----RNKLGSIVRQTVTGGNNETMGDAVNNTGLLIPGELSAPNTPTYG 986
                  |:.||.. ||     |.|...::::..:...::.:..|...:.||:|.:.|.......|
 Frog   714 ------LELAADQCRLWPTLPREKQLELIQKEESTVFSQAIHYANRMSYLLLPLDTSKNRMLRGG 772

  Fly   987 ---GDTEILAKALQQQQPRKQIMSIGG----------GDDDDEDEDEDEYT-------------- 1024
               ||||.:..:....       |:.|          |.:|.|..|...|.              
 Frog   773 AGLGDTESVTNSFITN-------SMAGSMAESADTESGFEDSESSDVAHYVVRFVTRFVDKVCTE 830

  Fly  1025 AGSPSTPQKQLEAGADDLEYAGGGDYEADEEDEDEVDEHV----AAQRARQR---VQSPTKISPR 1082
            :|..|...|.|.....|:                 |..|:    |..|..:|   :|.|..:.|.
 Frog   831 SGVTSEHLKNLHTMIPDI-----------------VQMHIETLDAVHRESKRLPPIQKPKLLLPT 878

  Fly  1083 TPVTQNDPLGAL--------NEEESAAS-----------------------ATPTQETQQEQQHS 1116
            ....:...:..|        .||.|..|                       .||......||...
 Frog   879 LLAGEEMVMDGLRVYLLPDGREEASGVSLGGPPLLPAEGALFLTSYRCIFKGTPVDSLVAEQSVV 943

  Fly  1117 QSQIDSSIYSDKPILFRGQ-----------RSAT-------FDE------STQIGKSMHRSE--- 1154
            :|...:|:..:|.|....|           ||.|       |||      |....|::|:..   
 Frog   944 RSFPIASLTKEKKINVTVQLDQYLQEALQLRSCTFQLLKVAFDEDVPSEASELFRKNLHKLRFPQ 1008

  Fly  1155 ----TMPVASSGVT----------------NSL--ANIGSS---LKFTFGRYSPARLSLKKDLKL 1194
                |.|: ::|:|                |.|  .::..|   :.|:.||:       .||..|
 Frog  1009 DVLGTFPL-TAGLTVQHSTQTRAKDKNPSLNPLHVTDVFQSHVAMSFSLGRF-------YKDTTL 1065

  Fly  1195 PANIIENISSI--SPSLTGKKSNELI---QGSLSSIKSAAN--SLTKKFDEIKGVISANSTPTKT 1252
            ..|:::|....  ...:|.:|.:...   :||.:|::..::  ||:::.:......|....|.|.
 Frog  1066 SKNLVKNAKKTIGRQYVTRRKYSPPSWDHRGSQNSLEQQSDDISLSEEMERNTLTTSTLKAPEKQ 1130

  Fly  1253 NNGH 1256
            ..|:
 Frog  1131 TIGN 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CragNP_001162710.2 uDENN 189..279 CDD:214824 22/72 (31%)
DENN 308..492 CDD:307995 59/198 (30%)
dDENN 551..624 CDD:129037 19/72 (26%)
PPR repeat 808..837 CDD:276811 2/28 (7%)
sbf1XP_012813917.1 uDENN 1..86 CDD:214824 22/72 (31%)
DENN 117..306 CDD:214823 59/197 (30%)
dDENN 360..428 CDD:129037 19/76 (25%)
SBF2 538..754 CDD:289132 45/271 (17%)
PH-GRAM_MTMR5 883..1001 CDD:275417 22/117 (19%)
Myotub-related 1142..1586 CDD:284109
PH_Sbf1_hMTMR5 1816..1921 CDD:269941
PH 1820..1921 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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