DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tut and elavl3

DIOPT Version :9

Sequence 1:	NP_729346.1	Gene:	tut / 317996	FlyBaseID:	FBgn0052364	Length:	230	Species:	Drosophila melanogaster
Sequence 2:	XP_012808614.1	Gene:	elavl3 / 594912	XenbaseID:	XB-GENE-490864	Length:	363	Species:	Xenopus tropicalis

Alignment Length:	138	Identity:	28/138 - (20%)
Similarity:	58/138 - (42%)	Gaps:	38/138 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    33 DEGKGELFLSCIPRNHSCSPRWIVEVASELGEV---YIMRYKIDFSGNSRGYAYLQYINVDLKES 94
            |:.|..|.::.:|:|  .:......:...:||:   .::|.||  :|.|.||.::.|::.:..:.
Frog    31 DDSKTNLIVNYLPQN--MTQEEFKSLFGSIGEIESCKLVRDKI--TGQSLGYGFVNYVDPNDADK 91

  Fly    95 AMQYLPMRFRQLCMCLRVEPSTNNRELVLKNVE--------SSLRPWQVYQEMLKIHPFTIVRVY 151
            |:..|                 |..:|..|.::        :|:|...:|...|   |.|   :.
Frog    92 AINTL-----------------NGLKLQTKTIKVSYARPSSASIRDANLYVSSL---PKT---MN 133

  Fly   152 EYQLDQFF 159
            :.:::|.|
Frog   134 QKEMEQLF 141

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tut	NP_729346.1	RRM1_hnRNPR_like	36..115	CDD:240695	16/81 (20%)
tut	NP_729346.1	DUF3388	<127..169	CDD:288701	8/41 (20%)
elavl3	XP_012808614.1	ELAV_HUD_SF	32..362	CDD:273741	27/137 (20%)
		RRM1_Hu	34..111	CDD:241094	19/97 (20%)
		RRM_SF	116..206	CDD:302621	8/32 (25%)
		RRM3_HuC	279..363	CDD:241099
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910