DRSC/TRiP Functional Genomics Resources

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Protein Alignment tut and elavl1

DIOPT Version :9

Sequence 1:NP_729346.1 Gene:tut / 317996 FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:NP_001005461.1 Gene:elavl1 / 448062 XenbaseID:XB-GENE-481800 Length:326 Species:Xenopus tropicalis


Alignment Length:248 Identity:49/248 - (19%)
Similarity:89/248 - (35%) Gaps:91/248 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DEGKGELFLSCIPRNHSCSPRWIVEVASELGEV---YIMRYKIDFSGNSRGYAYLQYINVDLKES 94
            |.|:..|.::.:|:|.:...  :..:.|.:|||   .::|.|:  :|:|.||.::.|:|....|.
 Frog    16 DIGRTNLIVNYLPQNMTQDE--LRSLFSSIGEVESAKLIRDKV--AGHSLGYGFVNYLNAKDAER 76

  Fly    95 AMQYL-PMRFRQLCMCLRV-EPSTNN------------RELVLKNVESSLRPWQVYQEMLKIHPF 145
            |:..| .:|.:...:.:.| .||:.:            |.:..|:||....|:.           
 Frog    77 AINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFG----------- 130

  Fly   146 TIVRVYEYQ--LDQ--------FFYIFEYRN-------------------------------NDS 169
               |:...:  :||        .|..|:.|:                               |.:
 Frog   131 ---RIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKN 192

  Fly   170 AASAHQRVRNSIRKFG---EHA------------HISWLTAENILSRASGSFC 207
            .|...|...:..|:||   .|.            |:|.::..|:.|.||..:|
 Frog   193 MALLSQLCHSPARRFGGPVHHQAQRFRFSPMGVDHMSSISGVNVASSASSGWC 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:240695 20/83 (24%)
DUF3388 <127..169 CDD:288701 9/82 (11%)
elavl1NP_001005461.1 RRM 19..326 CDD:330708 47/245 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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