DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment tut and elavl2

DIOPT Version :9

Sequence 1:	NP_729346.1	Gene:	tut / 317996	FlyBaseID:	FBgn0052364	Length:	230	Species:	Drosophila melanogaster
Sequence 2:	NP_001002172.2	Gene:	elavl2 / 431719	ZFINID:	ZDB-GENE-040704-9	Length:	389	Species:	Danio rerio

Alignment Length:	166	Identity:	35/166 - (21%)
Similarity:	67/166 - (40%)	Gaps:	39/166 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly     8 CTSQVNGTITITTRKVLDENLKSLLDEGKGELFLSCIPRNHSCSPRWIVEVASELGEV---YIMR 69
            |||. ||..:::........:.:..::.|..|.::.:|:|  .:...:..:...:||:   .::|
Zfish    40 CTSS-NGPNSVSNTCTSPVEMPNGSEDSKTNLIVNYLPQN--MTQEELKSLFGSIGEIESCKLVR 101

  Fly    70 YKIDFSGNSRGYAYLQYINVDLKESAMQYLPMRFRQLCMCLRVEPSTNNRELVLKNVE------- 127
            .||  :|.|.||.::.|:.....|.|:..|                 |...|..|.::
Zfish   102 DKI--TGQSLGYGFVNYMEPKDAEKAINTL-----------------NGLRLQTKTIKVSYARPS 147

  Fly   128 -SSLRPWQVYQEMLKIHPFTIVRVYEYQLDQFFYIF 162
             :|:|...:|...|   |.|:.   :.:|:|.|..|
Zfish   148 SASIRDANLYVSGL---PKTMT---QKELEQLFSQF 177

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
tut	NP_729346.1	RRM1_hnRNPR_like	36..115	CDD:240695	17/81 (21%)
tut	NP_729346.1	DUF3388	<127..169	CDD:288701	10/44 (23%)
elavl2	NP_001002172.2	ELAV_HUD_SF	65..388	CDD:273741	30/140 (21%)
		RRM1_Hu	67..144	CDD:241094	20/97 (21%)
		RRM2_HuB	149..238	CDD:241219	10/35 (29%)
		RRM_SF	303..388	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910