DRSC/TRiP Functional Genomics Resources

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Protein Alignment tut and a1cf

DIOPT Version :10

Sequence 1:NP_729346.1 Gene:tut / 317996 FlyBaseID:FBgn0052364 Length:230 Species:Drosophila melanogaster
Sequence 2:XP_002935470.2 Gene:a1cf / 100493284 XenbaseID:XB-GENE-952965 Length:591 Species:Xenopus tropicalis


Alignment Length:169 Identity:45/169 - (26%)
Similarity:82/169 - (48%) Gaps:16/169 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 ELFLSCIPRNHSCSPRWIVEVASELGEVYIMRYKIDFSGNSRGYAYLQYIN-VDLKESAMQ---Y 98
            |:|:..:||:  .....::.:..:.|:||.||..:||:||:||||::.:.| .|.:::..|   |
 Frog    57 EIFIGKLPRD--LFEDELIPLCEKTGKVYEMRMMMDFNGNNRGYAFVTFTNRQDARDAIKQLNNY 119

  Fly    99 LPMRFRQLCMCLRVEPSTNNRELVLKNVESSLRPWQVYQEMLKIHPFTI-VRVYEYQLDQF---- 158
            .....|.|.:|    .|.:|..|.:..:..:.|..::..||.|:....: |.||....|:.    
 Frog   120 EIRNGRLLGVC----ASVDNCRLFVGGIPKTKRREEILVEMRKVTDGVLDVIVYPSAADKSKNRG 180

  Fly   159 FYIFEYRNNDSAASAHQR-VRNSIRKFGEHAHISWLTAE 196
            |...||.::.:||.|.:: :...|:.:|....:.|...|
 Frog   181 FAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPE 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tutNP_729346.1 RRM1_hnRNPR_like 36..115 CDD:409695 24/80 (30%)
a1cfXP_002935470.2 hnRNP-R-Q 2..591 CDD:273732 45/169 (27%)

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