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Protein Alignment CG12081 and PMD1

DIOPT Version :9

Sequence 1:	NP_001259343.1	Gene:	CG12081 / 31799	FlyBaseID:	FBgn0030053	Length:	403	Species:	Drosophila melanogaster
Sequence 2:	NP_011058.3	Gene:	PMD1 / 856869	SGDID:	S000000934	Length:	1753	Species:	Saccharomyces cerevisiae

Alignment Length:	274	Identity:	66/274 - (24%)
Similarity:	102/274 - (37%)	Gaps:	89/274 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    68 PLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDENLCNTLYCFDPKTAQWSRPQVT-GCLPG----- 126
            ||..|:||                                 :|...:.:|.::| .|..|
Yeast    13 PLNLPIVP---------------------------------NPNLDEATRKKLTLECRTGAAVEL 44

  Fly   127 ARDG---HSA------CVIGNSMYI-------FGGFVDEINEF-------SSDVHSLNLDTMEWR 168
            ||.|   |..      ..|.||:.:       ||...|...:|       |.::..|:|.:..|:
Yeast    45 ARSGVFVHGGLTLPLNLTIINSLQLQKELILYFGKQKDRNADFKTLADWISPEIFFLDLISRTWQ 109

  Fly   169 YVQTF-----------GVPPSYRDFHASVAYEQERMYIFGGRGDKHSPYHSQEETYCHEIVYLDM 222
            .:.|.           |:....|.|| |:.:.:..:|||||.  ..||::..|....:|:..||:
Yeast   110 RINTTIDTTSENELNNGLSFKERLFH-SMCFTESNIYIFGGL--MVSPHNGYELIATNELWKLDL 171

  Fly   223 KTKVWHRPFTAGKVPVGRR-SHSMFVYN--------KLIYVFGGYNGLLDQHFNDLYTFDPRTKL 278
            |||.|  ...:....:.|| :|||.|.|        |||.| ||.:. :|.....:..|:.||.|
Yeast   172 KTKCW--SLISENPQITRRFNHSMHVLNENNENQDTKLIIV-GGLDN-MDIPVKKIDIFNLRTSL 232

  Fly   279 WNLIRANGKAPTAR 292
            |.....:.:.|.::
Yeast   233 WESESKSDENPASK 246

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.