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Protein Alignment CG12081 and PMD1
DIOPT Version :9
Sequence 1: | NP_001259343.1 |
Gene: | CG12081 / 31799 |
FlyBaseID: | FBgn0030053 |
Length: | 403 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_011058.3 |
Gene: | PMD1 / 856869 |
SGDID: | S000000934 |
Length: | 1753 |
Species: | Saccharomyces cerevisiae |
Alignment Length: | 274 |
Identity: | 66/274 - (24%) |
Similarity: | 102/274 - (37%) |
Gaps: | 89/274 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 68 PLKYPLVPFQRYGHTVVAYKDRIYIWGGRNDENLCNTLYCFDPKTAQWSRPQVT-GCLPG----- 126
||..|:|| :|...:.:|.::| .|..|
Yeast 13 PLNLPIVP---------------------------------NPNLDEATRKKLTLECRTGAAVEL 44
Fly 127 ARDG---HSA------CVIGNSMYI-------FGGFVDEINEF-------SSDVHSLNLDTMEWR 168
||.| |.. ..|.||:.: ||...|...:| |.::..|:|.:..|:
Yeast 45 ARSGVFVHGGLTLPLNLTIINSLQLQKELILYFGKQKDRNADFKTLADWISPEIFFLDLISRTWQ 109
Fly 169 YVQTF-----------GVPPSYRDFHASVAYEQERMYIFGGRGDKHSPYHSQEETYCHEIVYLDM 222
.:.|. |:....|.|| |:.:.:..:|||||. ..||::..|....:|:..||:
Yeast 110 RINTTIDTTSENELNNGLSFKERLFH-SMCFTESNIYIFGGL--MVSPHNGYELIATNELWKLDL 171
Fly 223 KTKVWHRPFTAGKVPVGRR-SHSMFVYN--------KLIYVFGGYNGLLDQHFNDLYTFDPRTKL 278
|||.| ...:....:.|| :|||.|.| |||.| ||.:. :|.....:..|:.||.|
Yeast 172 KTKCW--SLISENPQITRRFNHSMHVLNENNENQDTKLIIV-GGLDN-MDIPVKKIDIFNLRTSL 232
Fly 279 WNLIRANGKAPTAR 292
|.....:.:.|.::
Yeast 233 WESESKSDENPASK 246
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.