DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12081 and MDS3

DIOPT Version :9

Sequence 1:NP_001259343.1 Gene:CG12081 / 31799 FlyBaseID:FBgn0030053 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_011318.2 Gene:MDS3 / 852678 SGDID:S000003165 Length:1487 Species:Saccharomyces cerevisiae


Alignment Length:280 Identity:58/280 - (20%)
Similarity:91/280 - (32%) Gaps:99/280 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 PLKYPLVPF------------------QRYGHTVVAYKDRIYIWGG------------------- 95
            |||.|.:|.                  .|.|..|...:..|::.||                   
Yeast    13 PLKLPPLPLTSDSNEFDECARKRLTLDYRTGSAVTLTRSNIFVHGGLTIPLNLPVVNSMQLQKEL 77

  Fly    96 --------------RN-DENLCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGG 145
                          || :|.:....:..|..:..|.|.:.:                     |..
Yeast    78 ILFFAKEKNNGSSFRNLNEWISKETFFLDLMSRTWYRVKTS---------------------FDQ 121

  Fly   146 FVDEINEFSS-------DVHSLNLDTMEWRYVQTFGVPPSYRDFHASVAYEQERMYIFGGRGDKH 203
            ..:|:.:..|       |.:.:..|..:.:.:::   |...|.|| |:.|....:|||||.  ..
Yeast   122 RTEELLKAESSSAKADNDTNEIRTDIKKGKSLES---PLKERLFH-SLCYLDGCLYIFGGL--TV 180

  Fly   204 SPYHSQEETYCHEIVYLDMKTKVWHRPFTAGKVPVGRR-SHSMFVYN--------KLIYVFGGYN 259
            ||....|....:|:..||:.||.|  ...:....:.|| :|:|.|.|        |||.| ||.|
Yeast   181 SPQSGYELIATNELWKLDLNTKKW--SLLSDDPQIARRFNHTMHVKNENNDNRDTKLIIV-GGLN 242

  Fly   260 GLLDQHFNDLYTFDPRTKLW 279
            . :||....:..::.....|
Yeast   243 N-MDQPVKKIDIYNISQNCW 261

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity