DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12081 and Fbxo42

DIOPT Version :10

Sequence 1:NP_572494.1 Gene:CG12081 / 31799 FlyBaseID:FBgn0030053 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001382519.1 Gene:Fbxo42 / 362646 RGDID:1304787 Length:717 Species:Rattus norvegicus


Alignment Length:394 Identity:85/394 - (21%)
Similarity:144/394 - (36%) Gaps:101/394 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GGP--QRVNHAA--VGVGDFIYSFGGYCT--GYDYRYNEPIDVHALNAHTMRWTLVPQQLDDAGV 67
            |.|  ||.:|:|  ......:|.||| ||  ..:..:|   |:..|:.::..|..          
  Rat   113 GTPITQRFSHSACYYDANQSMYVFGG-CTQSSCNAAFN---DLWRLDLNSKEWIR---------- 163

  Fly    68 PLKYPLVPFQRYGHTVVAYKDRIYIWGG---------RNDENLCNTLYCFDPKTAQWSRPQVTGC 123
            ||.....|..:.|.|:|.|||.:.::||         ...|...:.::.:.|....|:      |
  Rat   164 PLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKNWWN------C 222

  Fly   124 L-----PGARDGHSACVIGNSMYIFGGFVDEINEFSSDVHSLNLDTMEWRYVQTFGVPPSYRDFH 183
            :     |....|||:||||:.|.:|||.:.. .:.|::|..|:|:...|......|..|..|...
  Rat   223 IVTTHGPPPMAGHSSCVIGDKMIVFGGSLGS-RQMSNEVWVLDLEQWAWSKPNISGPSPHPRGGQ 286

  Fly   184 ASVAYEQERMYIFGGRGDKHSPY------------------------HSQEETYCHEIVYLDMKT 224
            :.:..:...:.|.||.|..::.:                        |...|.:||....:....
  Rat   287 SQIVIDDATILILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDHGAPELWCHPACRVGQCV 351

  Fly   225 KVWHRPFTAGKVPVGRRSHSMFVYNKLIYVFGGYNGLLDQHFNDLYTFDPRTKLW---NLIRANG 286
            .|:      .:.|.||...|..:.::...:......|:           |.|:.:   :.:|:..
  Rat   352 VVF------SQAPSGRAPLSPSLNSRPSPISATPPALV-----------PETREYRSQSPVRSMD 399

  Fly   287 KAPTARRRQCAIVMGTRMFLFGGTSPR----SGSSSSPAAVSPTQETGGAAAAGGVVPPGVALID 347
            :||....|            :|...||    :.|.|...::||.:..|.....||.:.||.|.:.
  Rat   400 EAPCVNGR------------WGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGNLSPGTAAVG 452

  Fly   348 YSDL 351
            .:.|
  Rat   453 GASL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12081NP_572494.1 NanM 13..306 CDD:442289 68/337 (20%)
KELCH repeat 13..69 CDD:276965 13/59 (22%)
KELCH repeat 78..125 CDD:276965 12/60 (20%)
KELCH repeat 128..170 CDD:276965 16/41 (39%)
KELCH repeat 180..236 CDD:276965 10/79 (13%)
Fbxo42NP_001382519.1 F-box_FBXO42 47..84 CDD:438882
NanM 110..>321 CDD:442289 55/228 (24%)
KELCH repeat 119..168 CDD:276965 15/62 (24%)
KELCH repeat 174..229 CDD:276965 12/60 (20%)
KELCH repeat 232..271 CDD:276965 15/39 (38%)
Blue background indicates that the domain is not in the aligned region.

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