back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG12081 and Klhdc9

DIOPT Version :9

Sequence 1:	NP_001259343.1	Gene:	CG12081 / 31799	FlyBaseID:	FBgn0030053	Length:	403	Species:	Drosophila melanogaster
Sequence 2:	NP_001101820.1	Gene:	Klhdc9 / 360878	RGDID:	1561025	Length:	350	Species:	Rattus norvegicus

Alignment Length:	303	Identity:	67/303 - (22%)
Similarity:	106/303 - (34%)	Gaps:	98/303 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 GGPQRVNH-AAVGVGDFIYSFGGYCTGYDYRYNEPID-------VHALNAHT---MRWTLVPQQL 62
            |||.|.:| ||:..|.::...||:            |       |.||:..:   ..||..|...
  Rat    75 GGPLRSHHDAALVGGRWLCVVGGW------------DGSRRLSTVAALDTSSGVWEVWTAKPANC 127

  Fly    63 DDAGVPLKYPLVPFQRYGHTVVAYKDRIY----IWGGRNDENLCNTLYC--FDPKTAQWSRPQVT 121
            ..||:.           .||.....||.:    ..||...:....::|.  .|..|..:...: .
  Rat   128 PPAGLS-----------SHTCTRISDREFRVSGREGGTRTQRRYGSIYTLKLDHSTRTYCYKE-E 180

  Fly   122 GCLPGARDGHSACVI-------GNSMYIFGGFVDEINEFSSDVHSLNLDTMEWRYVQTFGVPPSY 179
            ||...:|.||.|.::       |:.:.:|||    .|....:|..      :|.       |...
  Rat   181 GCHTASRSGHCAALLPTAGPHPGHQLLLFGG----CNSVGPEVAG------QWS-------PGKI 228

  Fly   180 RDFHASVA---YEQERMYIFGGRGDKHSP----YHS------------------QEETYCHEIVY 219
            :: .|.||   .||....:..|:|.:..|    :||                  ..:|.|:::..
  Rat   229 KE-EAPVAPRLTEQLANLVSSGQGLQQGPQSLRHHSCSVVGPFAVLFGGETLTRARDTICNDLYI 292

  Fly   220 LDMKTK--VW-HRPFT-AGKVPVGRRSHSMFVYNKLIYVFGGY 258
            .|.:..  :| |.|.| .|...||   |...::|..:|:.||:
  Rat   293 YDTRKSPPLWFHFPCTDRGLKRVG---HRTCLWNDQLYLVGGF 332

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.