DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12081 and hcf-1

DIOPT Version :10

Sequence 1:NP_572494.1 Gene:CG12081 / 31799 FlyBaseID:FBgn0030053 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_501279.1 Gene:hcf-1 / 177560 WormBaseID:WBGene00001827 Length:782 Species:Caenorhabditis elegans


Alignment Length:299 Identity:79/299 - (26%)
Similarity:137/299 - (45%) Gaps:38/299 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 YCTGYDYRYNEPIDVHALNAHTMRWTLVPQQLDDAGVPLKYPLVPFQRYGHTVVAYKDRIYIWGG 95
            |..|.:.|..|.      ..:.:||.:|.|.....         |..|:||..|..|:.|.|:||
 Worm    12 YSRGDESRSEEQ------EKNVVRWRIVQQSTGPN---------PKPRHGHRAVVLKELIVIFGG 61

  Fly    96 RNDENLCNTLYCFDPKTAQWSRPQVTGCLPGARDGHSACVIGNSMYIFGGFVDEINEFSSDVHSL 160
            .| |.:.:.|:.::.:..:|:.||..|.:|.......|..:||.:|.||| :.|..::::|::.|
 Worm    62 GN-EGMIDELHAYNTQKREWTAPQCCGDVPTPAAAFGAISLGNKIYRFGG-MTEYGKYTNDLYEL 124

  Fly   161 NLDTMEWR----YVQTFGVPPSYRDFHA-SVAYEQERMYIFGG-RGDKHSPYHSQEETYCHEIVY 219
            .....|||    .|.:.|..|..|..|: .|:.:.::.|:||| ..|.:.|..:... |..::..
 Worm   125 QSTRWEWRRLNPRVHSNGHLPCPRIGHSFVVSQKSQKAYVFGGLSNDLNDPKRNVPH-YLDDLYV 188

  Fly   220 LDM---KTKVWHRPFTAGKVPVGRRSHSMFVYNK----LIYVFGGYNGLLDQHFNDLYTFDPRTK 277
            :::   :..:|.:....|..|:.|.||:..:|.|    .:.|:||.||:   ...||:..:..|.
 Worm   189 INLSGPQHLIWEKLNATGPGPISRESHTAVIYEKDSISRMVVYGGMNGV---RLGDLWYLNLNTL 250

  Fly   278 LWNLIR----ANGKAPTARRRQCAIVMGTRMFLFGGTSP 312
            .|..|:    ..|..|..|....::::|.:||::||..|
 Worm   251 HWTEIKFDDPRTGIPPMPRSLHSSVLIGDKMFVYGGWVP 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12081NP_572494.1 NanM 13..306 CDD:442289 75/291 (26%)
KELCH repeat 13..69 CDD:276965 8/37 (22%)
KELCH repeat 78..125 CDD:276965 16/46 (35%)
KELCH repeat 128..170 CDD:276965 13/45 (29%)
KELCH repeat 180..236 CDD:276965 12/60 (20%)
hcf-1NP_501279.1 NanM 35..366 CDD:442289 72/270 (27%)
KELCH repeat 44..89 CDD:276965 16/45 (36%)
KELCH repeat 93..145 CDD:276965 15/52 (29%)
KELCH repeat 212..267 CDD:276965 16/57 (28%)
KELCH repeat 269..334 CDD:276965 7/21 (33%)
FN3 <593..>741 CDD:442628
Blue background indicates that the domain is not in the aligned region.

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