DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps11 and dor

DIOPT Version :9

Sequence 1:NP_730776.1 Gene:Vps11 / 317987 FlyBaseID:FBgn0052350 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_477286.2 Gene:dor / 31118 FlyBaseID:FBgn0000482 Length:1002 Species:Drosophila melanogaster


Alignment Length:873 Identity:157/873 - (17%)
Similarity:286/873 - (32%) Gaps:311/873 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 FNIIVVPFVKIPNTAEI-------SC-YCFPESKSSTEERNIKLVI-----------CDKNRNIL 59
            :.|..:..:::||::..       .| |.|.|:..: |||:::.:.           |::.:..|
  Fly   222 YPITGLKLLRVPNSSRYIIVVTSPECIYTFQETLKA-EERSLQAIFAGYVSGVQEPHCEERKTDL 285

  Fly    60 IYLSNWECITFKSPSTRK-----------AIALCSLT-SNNSLAT------VTPDINNGIHIDIF 106
            .:..    :.|.:|...|           .|.:..|: ..||.||      :..|....:|:...
  Fly   286 TFSQ----LRFFAPPNSKYPKQWAWLCGEGIRVGELSIEANSAATLIGNTLINLDFEKTMHLSYG 346

  Fly   107 D--LNR-----LTKKQAAPIIASAYTQPSSTPLC-LNADVIDDKLFALAIGLGNGDILLHYGKIT 163
            :  ||.     ||:..|..:.|.     ....:| ||.:.:..:.|..|             ::.
  Fly   347 ERRLNTPKAFVLTEYHAVLLYAD-----HVRAICLLNQEQVYQEAFDEA-------------RVG 393

  Fly   164 KNFSANIRQHTVSGNAVNGIHFDFKTQPLDTTQIMFVTCVQGVYCFMLKEKCIMDTKFVLDNDKG 228
            |..|  |.:..::|:                   ::|..|:.|:...:..:.....:..|  |||
  Fly   394 KPLS--IERDELTGS-------------------IYVYTVKTVFNLRVTREERNVWRIYL--DKG 435

  Fly   229 NLNYRSIMCKAGGGEINDSMLVVGRADAVYCYTPEGRGPCFAIEGAKECLAWVGHYLIVGVKNSN 293
              .|......|.....:..:::..||||.:.            :|:.:..|  .:|   ...:.:
  Fly   436 --QYELATAHAAEDPEHLQLVLCQRADAAFA------------DGSYQVAA--DYY---AETDKS 481

  Fly   294 LKQNATTLIVLDTENKIIVFQRQFQELFYVISENNFCYIVTNSGDTDACNMLMLEKNSIDVNIRL 358
            .::.....:||..:..||.:.::           ....:.|...:||.     |:::.::: |:.
  Fly   482 FEEVCLKFMVLPDKRPIINYVKK-----------RLSRVTTKPMETDE-----LDEDKMNI-IKA 529

  Fly   359 LVEKHMYNIALRLLH------REGYTSSPETALVRFQYGNHLLQ--------------------- 396
            ||   ::.|.|.|:.      .|.:.||.:|....|....|:|.                     
  Fly   530 LV---IWLIDLYLIQINMPDKDEEWRSSWQTEYDEFMMEAHVLSCTRQNRETVRQLIAEHADPRN 591

  Fly   397 -------KGDFSRATQEFIKTIGFIKPYAVISKLLYSRYN-----TYLLNYLTEWKKKN------ 443
                   .||:.....:.:|.    :.||...:.|.::.|     .|....:|...|..      
  Fly   592 MAQFAIAIGDYDEVVAQQLKA----ECYAEALQTLINQRNPELFYKYAPELITRLPKPTVDALMA 652

  Fly   444 ESSSCHT-RLIECCI---KRDQIEHEMQQDDFKHYKSPAK------------IKHLATLSKMYFA 492
            :.|.... :|:...|   .|:|.|...:..:|..||....            .:|...|...|. 
  Fly   653 QGSRLEVEKLVPTLIIMENREQREQTQRYLEFAIYKLNTTNDAIHNFLLHLYAEHEPKLLMKYL- 716

  Fly   493 CTPSNQVPVEEEHLLHQLLEYGPASLAVDLTTYLNNITFENVKESKNILSFCSILADHNDYCAKM 557
                 ::...:|.|:|..:.|. ..:..||          :|||::..|.           |  |
  Fly   717 -----EIQGRDESLVHYDIYYA-HKVCTDL----------DVKEARVFLE-----------C--M 752

  Fly   558 LAKIIEAFPVCDEKLLFYLLVFYFKLWRLDKVTSSFVSDFIKTHSLRMDKTIIVSRLYTFFNVTQ 622
            |.|.|.|   .|..|.|.:        :|.|.|:|..||           :.|..:|:.      
  Fly   753 LRKWISA---VDLALTFDM--------KLAKETASRPSD-----------SKIRRKLWL------ 789

  Fly   623 RIHGHQKNTGTLHNETIDKCIENLIKNNPDVALNENLSKRSFLMMLKSSCSTEEIKAIKIKPIFK 687
            ||..|.                  ||...||....||.|...|:.::.           :.|.|.
  Fly   790 RIAYHD------------------IKGTNDVKKALNLLKECDLLRIED-----------LLPFFA 825

  Fly   688 -----DRLLRSIVDSANELKLVENFNEKIKRSRSMLSLYTNN----------------PIEFRND 731
                 |....:|.|:      :.::|::|:..:..::..|..                .:| ..|
  Fly   826 DFEKIDNFKEAICDA------LRDYNQRIQELQREMAETTEQTDRVTAELQQLRQHSLTVE-SQD 883

  Fly   732 KCDICREMLSMQSIY-FLCQHSFHEECL 758
            .|:||..||.::..: |:|.|.||.:||
  Fly   884 TCEICEMMLLVKPFFIFICGHKFHSDCL 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps11NP_730776.1 zf-RING_5 732..776 CDD:291308 12/28 (43%)
dorNP_477286.2 Pep3_Vps18 311..464 CDD:282925 36/195 (18%)
CLH 650..797 CDD:128594 42/222 (19%)
Clathrin 654..783 CDD:279031 37/180 (21%)
Helo_like_N <828..889 CDD:305236 10/67 (15%)
RING 884..>914 CDD:238093 12/28 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445088
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23323
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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