DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vps11 and vps11

DIOPT Version :9

Sequence 1:NP_730776.1 Gene:Vps11 / 317987 FlyBaseID:FBgn0052350 Length:830 Species:Drosophila melanogaster
Sequence 2:NP_593839.1 Gene:vps11 / 2543359 PomBaseID:SPAC823.12 Length:906 Species:Schizosaccharomyces pombe


Alignment Length:1005 Identity:198/1005 - (19%)
Similarity:351/1005 - (34%) Gaps:331/1005 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDISVFEWKKVDLFNI------------------IVVPF------VKIPNTAEISCYCFPESKSS 41
            |...:..||::.||.:                  .:|.|      |.|.|::..|.    :|...
pombe     1 MSTFIKNWKRITLFQVKAIEENIDRLTSSFSSNGELVVFATAFGDVSIYNSSFKSL----QSIKV 61

  Fly    42 TEERNIKLVICDKNRNILIYLSNWECITFKSPSTRKAIALCSLTSNNSLATVTPDINNGIHIDIF 106
            .:|.:|:.::...|:..|:: ||.|..| .:.||....|......|.....|....:.      |
pombe    62 EDESSIQQILWLDNKTFLLF-SNVEGGT-GTNSTVIIYAFSQADENEPPQFVLVTTHK------F 118

  Fly   107 DLNRLTKKQAAPIIASAYTQPSSTPLCLNADVIDDKLFALAIGLGNGDILLHYGK------ITKN 165
            .:|    :...||||     .|.:|:        ||  .:|.|.|.|.:..::|.      |..:
pombe   119 SIN----ESPYPIIA-----VSQSPI--------DK--TIACGFGGGLVSCYHGNPLRERGIKNS 164

  Fly   166 FSANIRQHTVSGNAVNGI-HFDFKTQPLDTTQIMFVTCVQGVYCFMLKE-KCIMDTKFVLDNDKG 228
            :|.|:      |..:.|: :.|      |.:.::|:......|....|. .|       |||...
pombe   165 YSHNL------GEPITGLTYLD------DQSSVLFIATTNKTYSLSGKSLSC-------LDNTGV 210

  Fly   229 NLNYRSIMCKA---GGGEINDSMLVVGRADAVYCYTPEGRGPCFAIEGAKECLAWVGHYLIV--- 287
            :||..| .||.   ...|.|.|..|..|:..:..|..:....||...|.|..:..:|..|.:   
pombe   211 SLNCSS-SCKTTPLQSREKNSSSFVCTRSSGLTFYDSKREKICFTFPGEKHYMTVMGSILALCYT 274

  Fly   288 ------GVKNSNLKQNATT------------------LIVLDTENKIIVFQRQFQELFYVISENN 328
                  ...|..||::.::                  |:::|....:||::...:::...|....
pombe   275 PTLGTDSSTNEGLKKSFSSSSSIRKADASRNPAFPPRLLLVDLSRNLIVWEGHLKDVAVSILPLK 339

  Fly   329 FCYIVTNSGDTDACNMLMLEKNSIDVNIRLLVEKHMYNIALRLLHREGYTSSPETALVRFQYGNH 393
            ..::|..:.|    |:..|::.::...|.||.:|.|||:|:.|..:|........:|:| .|.:.
pombe   340 HGFLVVTADD----NVFELKRITLQEEISLLCQKMMYNLAISLAKKENMDIEFRESLMR-DYASF 399

  Fly   394 LLQKGDFSRATQEFIKTIGFIKPYAVISKLLYSRYNTYLLNYLTEWKKKNESSSCHTRLIECC-- 456
            |.::||||.:...:|::|..|...:|..:.|.::....|:..|.|..|...::|.|..|:..|  
pombe   400 LFRRGDFSASMDWYIRSIKSIDIPSVCLEFLKAQEIKQLIRLLEELIKTGLATSDHRLLLLSCYV 464

  Fly   457 -------IKR--DQIEHEMQQ-----------DDFKH----YKSPAKIKHLATLSKMYF------ 491
                   |::  |..|.:..|           |:.||    :.:..::..:...|:.|.      
pombe   465 EIHDSPSIRKLIDIGEIDFDQAFKICYDSNLLDEAKHLAIRFNNNERVLDVLVESEQYSEALRFF 529

  Fly   492 -ACTPSNQVPVEEEHLLHQLLEYGPASL-------------------AVDLT------------- 523
             :..|||.:|:        ||:||...|                   ..||:             
pombe   530 ESLPPSNLLPL--------LLKYGRVLLDKLPEKTTNIFIQFYSNSHRGDLSTSESKGELKTAKS 586

  Fly   524 ---TYLNNITFENV----------------KESKNILSFCS--------------ILADHNDYCA 555
               |||:.:.:..|                :|::....|..              |..:||....
pombe   587 LRQTYLSLLPYAQVANFSLPPSLYEISPSQEENQRAALFSEDVSYTAPSPQTCFHIFLNHNSELI 651

  Fly   556 KMLAKII-EAFPVCDEKLLFYLLVF--YFKLWRLDKVTSSFVSDFI--------KTHSL--RMDK 607
            ..|..|: .|.|  :.|.|....:|  |        :..||.|..:        |::||  :::|
pombe   652 SFLEGILPNASP--NYKTLINTCLFEAY--------IRESFASSNVEKQEFWQEKSNSLLKKVEK 706

  Fly   608 TI------IVSRLYTFFNVTQRIHGHQKNTGTL-------HNETIDKCIENLIKNNPDVALNENL 659
            .:      ::|::..|.:..:.:.|  |:..||       ....|::.::.:..:.||       
pombe   707 NVDLNAVFLISQILGFDDGVRFVQG--KSGQTLDIFRSFCQQNDIERALKMVRVHGPD------- 762

  Fly   660 SKRSFLMMLKSSCSTEEI------------------------------KAIKIKPIFKDRLLRSI 694
            .:..::|||....|.|.:                              |::.||       |..|
pombe   763 QQELYIMMLNCFASLENVDSWYQDINEIVNIIVSQRLISPTQLLDILGKSVNIK-------LEHI 820

  Fly   695 VDSANELKLVENFNEKIKRSR--------------SMLSLYTNNPIEFRNDKCDICREMLSMQSI 745
            .||..  .:::|:.|.|.:..              |.||:........:..||..|...|.:..:
pombe   821 SDSMQ--SVLDNYRESISKQNEAIEMGKRDIEEITSQLSILRTRAFVVQESKCSTCGIDLELPMV 883

  Fly   746 YFLCQHSFHEECLNYKSTKRQEKFLCIICK 775
            :|.|.||:|:.|:..:         ||.|:
pombe   884 HFRCGHSYHQRCVEDE---------CIRCR 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vps11NP_730776.1 zf-RING_5 732..776 CDD:291308 13/44 (30%)
vps11NP_593839.1 CLH 413..529 CDD:128594 22/115 (19%)
Clathrin 419..529 CDD:279031 20/109 (18%)
RING 871..903 CDD:302633 11/40 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2114
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54534
OrthoFinder 1 1.000 - - FOG0005040
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102537
Panther 1 1.100 - - LDO PTHR23323
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R897
SonicParanoid 1 1.000 - - X3565
TreeFam 1 0.960 - -
109.810

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