DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12111 and Vcan

DIOPT Version :10

Sequence 1:NP_572491.1 Gene:CG12111 / 31796 FlyBaseID:FBgn0030050 Length:188 Species:Drosophila melanogaster
Sequence 2:NP_001074718.1 Gene:Vcan / 13003 MGIID:102889 Length:3354 Species:Mus musculus


Alignment Length:124 Identity:36/124 - (29%)
Similarity:51/124 - (41%) Gaps:12/124 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GDNYYYIEPMNKVNWFQAAGACRMMNAHLASIEDKPEMEALIKYMKAKGFKNNDYFWISGNDLGT 116
            |..|.|.  .::..|..|...||:..|||.||....|.    .::...|   :||.||..||...
Mouse  3136 GQCYKYF--AHRRTWDAAERECRLQGAHLTSILSHEEQ----MFVNRVG---HDYQWIGLNDKMF 3191

  Fly   117 EGAFYWMSNGRPMTYAPWNGPKQMPDNYGGNENC-VHMFATREMINDANCKIQMLYVCE 174
            |..|.| ::|..:.|..|. |.|....:...|:| |.::......||..|...:.|.|:
Mouse  3192 EHDFRW-TDGSALQYENWR-PNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCK 3248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12111NP_572491.1 CLECT 55..174 CDD:153057 34/119 (29%)
VcanNP_001074718.1 Ig_Versican 26..152 CDD:409482
Ig strand A 26..29 CDD:409482
Ig strand A' 32..34 CDD:409482
Ig strand B 38..46 CDD:409482
Ig strand C 63..69 CDD:409482
Ig strand C' 80..83 CDD:409482
Ig strand D 101..106 CDD:409482
Ig strand E 112..118 CDD:409482
Ig strand F 126..133 CDD:409482
Ig strand G 143..152 CDD:409482
Link_domain_CSPGs_modules_1_3 150..244 CDD:239594
Link_domain_CSPGs_modules_2_4 251..346 CDD:239597
GAG-alpha (glucosaminoglycan attachment domain) 348..1308
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 625..646
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 801..863
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 881..908
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1010..1088
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1252..1288
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1396..1421
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1458..1524
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1924..1963
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2471..2490
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2849..2904
EGF_CA 3049..3083 CDD:238011
EGF_CA 3085..3121 CDD:238011
CLECT_CSPGs 3127..3250 CDD:153058 36/124 (29%)
CCP 3254..3310 CDD:153056
Blue background indicates that the domain is not in the aligned region.

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