DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12111 and clec4m

DIOPT Version :10

Sequence 1:NP_572491.1 Gene:CG12111 / 31796 FlyBaseID:FBgn0030050 Length:188 Species:Drosophila melanogaster
Sequence 2:XP_017948020.2 Gene:clec4m / 100497637 XenbaseID:XB-GENE-6043650 Length:225 Species:Xenopus tropicalis


Alignment Length:129 Identity:36/129 - (27%)
Similarity:58/129 - (44%) Gaps:13/129 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 GDNYYYIEPMNKVNWFQAAGACRMMNAHLASIEDKPEMEALIKYMKAKGFKNNDYFWISGNDLGT 116
            |..||:.:.:  :.|.:|...|....:.||.|..:.|.:.|.:..:      :|.:||..:|...
 Frog   105 GSCYYFSKSI--MGWNKARALCLKKESDLAVITSENEQDFLYETTQ------DDRYWIGLSDTDQ 161

  Fly   117 EGAFYWMSNGRPMT-YAPWNGPKQMPDNYGGNENCVHMFATREMINDANCKIQMLY-VCEATEP 178
            |||:.|:......| |..|.  :..|:::..||:|.||:...|. ||..|.....| :||...|
 Frog   162 EGAWVWVDGTDYSTSYKFWK--EGEPNDHLNNEDCAHMWTHGEW-NDVPCSYSYCYAICEKKIP 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12111NP_572491.1 CLECT 55..174 CDD:153057 32/120 (27%)
clec4mXP_017948020.2 CLECT_DC-SIGN_like 96..219 CDD:153060 34/124 (27%)

Return to query results.
Submit another query.