DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-1 and cid14

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001018181.1 Gene:cid14 / 3361384 PomBaseID:SPAC12G12.13c Length:684 Species:Schizosaccharomyces pombe


Alignment Length:741 Identity:197/741 - (26%)
Similarity:318/741 - (42%) Gaps:160/741 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 SSSSNSGNNNNNNNNNIINNTIT-----------------NTTNNTGNNSSAKPYLSR---PYSS 97
            |.......|::..:..::||..|                 |..::.|........:|.   ||..
pombe    39 SKRKEKDKNSDAYDEMLLNNNFTLLDQEEPMVEIGSKKSRNDNDSEGIRDKGGVEISNKNDPYIQ 103

  Fly    98 LNRVLNFRADSLEILQQQQQQQQ---------LNGTTQRNSTNINTTSGGSTSSSADS-----TT 148
            ..     :||.||.|::....::         |.|..:|.....|.....:..:::|.     .:
pombe   104 FG-----KADPLEPLEKPDLPEEAIKRGEPTILLGIPKREGRKTNPVHDKAVENNSDFIKFDWNS 163

  Fly   149 NRDNNSPANSSSTNGPGAGTGTSTGAGGTGTNSPATTASSTAATTTGPATSMSDTSNNPPQSTTT 213
            :.|.:|.:|..|.|.                                  .|:..:|.|     ..
pombe   164 DEDEDSVSNDKSKNN----------------------------------ESLKKSSKN-----EI 189

  Fly   214 PA-SRTNSIYYNPSRKKRPENKAGGAHYYMNNHMEMIAKYKGEPWRKPDYPYGEGVIGL-HEEIE 276
            |. .|....:::.:.:|...|:......|..:....       ||.: .|.....|..: |::|.
pombe   190 PGFMRQRGRFFHEANEKSDSNRKRKRQAYELDSQSC-------PWHR-QYKVEREVSRIFHQDIL 246

  Fly   277 HFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLG-----L 336
            ||..|:.|||.|||:|..:|.||...|...||...:.:||||.|.|:|||||:|||::.     .
pombe   247 HFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYR 311

  Fly   337 WEKLPLRTLEFELVSRGIAEACTVRVLDKASVPIIKLTDRETQVKVDISFNMQSGVQSAELIKKF 401
            ..|..:..|...|  :.:..|..|:|:..|:|||||..|..|:|.||||||...|:::..::..|
pombe   312 GTKKDMFVLAHHL--KKLKLASEVQVITTANVPIIKFVDPLTKVHVDISFNQPGGLKTCLVVNGF 374

  Fly   402 KRDYPVLEKLVLVLKQFLLLRDLNEVFTGGISSYSLILMCISFLQMHPR---GIYHDTANLGVLL 463
            .:.||.|..||:::|.||.:|.|||||.||:|||:::.:.:||||:|||   |...:..|.||||
pombe   375 MKKYPALRPLVIIIKHFLNMRALNEVFLGGLSSYAIVCLVVSFLQLHPRLSTGSMREEDNFGVLL 439

  Fly   464 LEFFELYGRRFNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPLTPGNDIGRSSYGVF 528
            |||.||||::|.|..:||::.|||.|..|.::  ..:..::|.||.|:||:...||:.:||.|:.
pombe   440 LEFLELYGKQFYYDAVGIAVHNGGFYFSKKKM--GWLKPNQPYLLSIQDPVDFQNDVSKSSRGLL 502

  Fly   529 QVQQAFKCAYRVL-----ALAVSPLNLLGIDPRVN---SILGRIIHITDDVIDYREWIRENFEHL 585
            :|:..|...:.:|     ||| |.:...|:: ||.   |||..|:.:.       |.:|::.||:
pombe   503 RVKATFANGFDLLTSKLYALA-SRIEREGVN-RVKDFPSILSTILSVD-------EGVRQHREHM 558

  Fly   586 VVVDRISPLPTAAPTAYATANGAPKYVIMPSGAVVQQLYHHPVQVPTAHGHSHAHSHSHGHAHPG 650
            :...:.:|:| ..|.....|..:.....:|...|..|                            
pombe   559 LKCYKNNPVP-LEPLVEVDALASIDVDKLPLQDVGLQ---------------------------- 594

  Fly   651 AHLCQPYVTGTTVSAVTTTT--TMAVVTVGVSAGGVQQQQQQQNATAHTHSQQQTQNQSQSRHRR 713
                  ||...:.|..|...  .:..|...:...|.:..|:|    |.|.:.:|:.:.|::...:
pombe   595 ------YVEDESDSDETDAAKDDLFKVNESIETNGHENFQKQ----ALTSTGEQSSSNSRANPSK 649

  Fly   714 GSTSSGDDSEDSKDGDVVETTSSAQE 739
            ....|.|||||  :..::|.|:::.|
pombe   650 LFNISSDDSED--EVPIIEDTTASDE 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 43/114 (38%)
PAP_assoc 458..518 CDD:281779 27/59 (46%)
cid14NP_001018181.1 TRF4 171..669 CDD:227585 173/598 (29%)
NT_PAP_TUTase 261..367 CDD:143392 43/107 (40%)
PAP_assoc 434..492 CDD:281779 27/59 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 68 1.000 Domainoid score I2721
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002099
OrthoInspector 1 1.000 - - otm47110
orthoMCL 1 0.900 - - OOG6_101092
Panther 1 1.100 - - LDO PTHR23092
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2219
SonicParanoid 1 1.000 - - X1551
TreeFam 1 0.960 - -
1110.800

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