DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-1 and MTPAP

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001259129.1 Gene:MTPAP / 31081 FlyBaseID:FBgn0024360 Length:612 Species:Drosophila melanogaster


Alignment Length:506 Identity:96/506 - (18%)
Similarity:166/506 - (32%) Gaps:176/506 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 EILQQQQQQQQLNGTTQRNSTNI------NTTSGGSTSSSADSTTNRDNN---------SPANSS 159
            |.:.:.|:|.|.:...|.:|...      ..:|.||...:......:|..         :...::
  Fly    41 EFIGRHQRQAQCSIVVQVSSEKSYEELYNYCSSFGSIMGAHHYCVRQDETLHYILLEYATSDEAA 105

  Fly   160 STNGPGAGTGTSTG-----------AGGTGTNSPATTASSTAATTTGPATSMSDTSNNPPQSTTT 213
            :..|.|...|..:|           |.|.|..||...|:      |.||....|           
  Fly   106 AAIGAGVTNGELSGVPVRSPFLWFRAAGGGRRSPKLVAN------TAPALLSLD----------- 153

  Fly   214 PASRTNSIYYNPSRKKRPENKAGGAHYYMNNHMEMIAKYKGEPWRKPDYPYGEGVIGLHEEIEHF 278
                                   |.......|:..:.:               |...:.|:::..
  Fly   154 -----------------------GTRQVDQRHLLGLLR---------------GAADIEEQVQQL 180

  Fly   279 YQYVLPTPCEHAIRNEV--------VKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVV-- 333
            |        ||...||:        ..:::..:..::|.|..:.|||...|......|:||::  
  Fly   181 Y--------EHTRLNELGIRMRFLAALQVQQAIAGMFPAAQAQPFGSSVNGFGRMGCDLDLILRF 237

  Fly   334 -LGLWEKLPLRT-----LEF---ELVSRGIAE------------------ACTVRVLDKASVPII 371
             ..:..|:||..     |.:   |.:|.|.::                  .|.||.:.:|.||||
  Fly   238 DSDMGAKIPLEAAVPSRLVYHTKENLSNGRSQTQRHMECFGDMLHLFLPGVCHVRRILQARVPII 302

  Fly   372 KLTDRETQVKVDISFNMQSGVQSAELIKKFKRDYPVLEKLVLVLKQFLLLRDLNEVFTG-GISSY 435
            |.......::||:|.:..:|...:||:..|....|.:..|...::::.....|.....| .||::
  Fly   303 KYHHEHLDLEVDLSMSNLTGFYMSELLYMFGEMDPRVRPLTFTIRRWAQTCGLTNPSPGRWISNF 367

  Fly   436 SLILMCISFLQMHPRGIY-------------------------------------HDTANLGVLL 463
            ||..:.:.|||...:.|.                                     .:.::|..||
  Fly   368 SLTCLVMFFLQQLRQPILPTIGALAKAAEPGDSRVTEDGINCTFTRNVDRLGFRSRNQSSLSELL 432

  Fly   464 LEFFELYGRRFNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDPL 514
            |:|||.|. :|::....||: |.|:.:.|.:        |  |.:.|.:||
  Fly   433 LQFFEFYS-QFDFHNRAISL-NEGKPLSKPD--------H--SAMYIVNPL 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 33/146 (23%)
PAP_assoc 458..518 CDD:281779 19/57 (33%)
MTPAPNP_001259129.1 NT_PAP_TUTase 193..333 CDD:143392 31/139 (22%)
PAP_assoc 427..477 CDD:281779 19/57 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5260
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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