DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trf4-1 and Tent4b

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_001359262.1 Gene:Tent4b / 214627 MGIID:1917820 Length:700 Species:Mus musculus


Alignment Length:957 Identity:311/957 - (32%)
Similarity:420/957 - (43%) Gaps:310/957 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDPFVGWFQKEQEGPSLCTWLKIWETNAQEMGALLNQQLQQATTINGSTSSSSSSSNSGNNNNNN 65
            |||.:.|||.||.|||...|::||||.........|....       |:.:||:|..||      
Mouse     1 MDPRIAWFQPEQLGPSNSLWMQIWETTQGLRNLYFNHHCH-------SSGASSASGGSG------ 52

  Fly    66 NNNIINNTITNTTNNTGNNSSAKPYLSRPYSSLNRVLNFRADSLEILQQQQQQQQLNGTTQRNST 130
                         :..|:.....|..:..:.|..|.|...|...|               ||:..
Mouse    53 -------------SGPGSPGGTAPAPAGMFRSGERPLGGLAVPAE---------------QRDFL 89

  Fly   131 NINTTSGGSTSSSADSTTNRDNNSPA--NSSSTNGPGAGTGTSTGAGGTGTNSPATTASSTAATT 193
            .:.||:           .|.:::.||  ...::.||.|              ||..:|.|:..  
Mouse    90 PLETTN-----------NNNNHHQPAAWARRASAGPSA--------------SPVPSAPSSPR-- 127

  Fly   194 TGPATSMSDTSNNPPQSTTTPASRTNSIYYNPSRKKRPENKAG--GAHYYMNNHMEMIAK----- 251
              ||.::      |...:|.|||       ..|.|::.:|||.  |.:|.:.......|.     
Mouse   128 --PAAAL------PASESTDPAS-------GSSNKRKRDNKASTYGLNYSLLQPSGGRAAGGGRA 177

  Fly   252 ------YKGEPWRKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQA 310
                  |.|.||::.:  |.:||:||||||..||:|:.|.|.|..:|.|||.|||:|:..:||.|
Mouse   178 DGGGGVYSGTPWKRRN--YNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVSRIESVIKELWPSA 240

  Fly   311 VVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEACTVRVLDKASVPIIKLTD 375
            .|:|||||:|||:||||||||||.|.||.|||.|||..|....:|:..:|:|||||:||||||||
Mouse   241 DVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTD 305

  Fly   376 RETQVKVDISFNMQSGVQSAELIKKFKRDYPVLEKLVLVLKQFLLLRDLNEVFTGGISSYSLILM 440
            ..|:||||||||:|:||::|:|||.|.:.||||..||||||||||.|||||||||||.||||.||
Mouse   306 SFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLM 370

  Fly   441 CISFLQMHPRGIYHD----TANLGVLLLEFFELYGRRFNYMKIGISIKNGGRYMPKDELQRDMVD 501
            .:||||:|||   .|    ..|.||||:||||||||.|||:|.||.||:||.|:.|||:|::|:|
Mouse   371 AVSFLQLHPR---EDACIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLD 432

  Fly   502 GHRPSLLCIEDPLTPGNDIGRSSYGVFQVQQAFKCAYRVLALAVSPLNLLGIDPRVNSILGRIIH 566
            |:|||:|.|||||.||||:||||||..||:|||..||.||:.||||:.....:....|||||||.
Mouse   433 GYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIR 497

  Fly   567 ITDDVIDYREWIRENFEHLVVVDRISPLPTAAPTAYATANGAPKYVIMPSGAVVQQLYHHPVQVP 631
            :||:|..||:||.:.:                                       .|.:.|    
Mouse   498 VTDEVATYRDWISKQW---------------------------------------GLQNRP---- 519

  Fly   632 TAHGHSHAHSHSHGHAHPGAHLCQPYVTGTTVSAVTTTTTMAVVTVGVSAGGVQQQQQQQNATAH 696
                                   :|...|..|:.:..|                ||..:.|    
Mouse   520 -----------------------EPSCNGNGVTLIVDT----------------QQLDKCN---- 541

  Fly   697 THSQQQTQNQSQSRHRRGSTSSGDDSEDSKDGDVVETTSSAQEVVDIALSTPNGLANMSMPMPVH 761
                   .|.|:.:...|...|                                  |.|.|:..|
Mouse   542 -------NNLSEEKEALGKCRS----------------------------------NASEPLSKH 565

  Fly   762 AVGMPASNSWSGNGNGNGNSSSSTGSS---------------------PEIAHIAAQEMDPELED 805
            :         |.:.:|..:|||:|.||                     |.:..:.:|::..|:..
Mouse   566 S---------SNSSSGPVSSSSATQSSSSDVDSDATPCKTPKQLLCRPPTVTRVGSQDVSLEVSQ 621

  Fly   806 QQQQQQHQETSGGNGFIRPGDVGTGSNRGGGDGSGGRNYNQRNNHNSSGYYHQQYYVPPPMQQQL 870
            ...:.|..:|:                            |..||.|.|.:...:.:         
Mouse   622 AVGKMQSTQTT----------------------------NTPNNANKSQHGSARLF--------- 649

  Fly   871 SKSNSSSNYHQQHHHSH-------SHGNHSHRQQHHHQQQHHHQQRP 910
              .:||..:......||       .|...|:.|.:|.:::.|.:..|
Mouse   650 --RSSSKGFQGTAQTSHGALMTSKQHQGKSNTQYYHGKKRRHKRDAP 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 71/109 (65%)
PAP_assoc 458..518 CDD:281779 41/59 (69%)
Tent4bNP_001359262.1 TRF4 201..>473 CDD:227585 180/274 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167830720
Domainoid 1 1.000 136 1.000 Domainoid score I4907
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002099
OrthoInspector 1 1.000 - - otm42852
orthoMCL 1 0.900 - - OOG6_101092
Panther 1 1.100 - - O PTHR23092
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2219
SonicParanoid 1 1.000 - - X1551
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.730

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