DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trf4-1 and Y34F4.3

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_497314.1 Gene:Y34F4.3 / 189592 WormBaseID:WBGene00021338 Length:121 Species:Caenorhabditis elegans


Alignment Length:80 Identity:19/80 - (23%)
Similarity:34/80 - (42%) Gaps:14/80 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   241 YMNNHMEMIAK---YKGEPW----------RKPDYPYGEGVI-GLHEEIEHFYQYVLPTPCEHAI 291
            |..|.::|::|   ||.:.|          .|.|:...:||: .:.|.|....::.:....:..|
 Worm    38 YSTNFIQMVSKKLEYKPDRWCKYPMCIADPFKTDHNLEQGVVLQMFEFIRSCMEHSMEVFTDCRI 102

  Fly   292 RNEVVKRIEAVVHSI 306
            |::...|.|..|..|
 Worm   103 RSDCHSRYELDVDEI 117

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 6/16 (38%)
PAP_assoc 458..518 CDD:281779
Y34F4.3NP_497314.1 PAP_assoc 25..72 CDD:367682 8/33 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.