DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-1 and pup-2

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_498100.1 Gene:pup-2 / 175708 WormBaseID:WBGene00019628 Length:508 Species:Caenorhabditis elegans


Alignment Length:458 Identity:93/458 - (20%)
Similarity:165/458 - (36%) Gaps:100/458 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 QRNSTNINTTSGGSTSSSADSTTNR-DNNSPANSSSTNGPGAGTGTSTGAGGTGTNSPATT---A 186
            |::|..:.    |..::::|.|..| .::||...|.....|...|..........:.|..|   .
 Worm     5 QKSSPTVK----GVKTTTSDCTERRHSSSSPCKMSQNGSSGYYEGDVLLDDDALVSMPEATLIEC 65

  Fly   187 SSTAATTTGPATSMSDTSNNPPQSTTTP-ASRTNSIYYNPSRKKRPENKAGGAHYYMNNHMEMIA 250
            ....|.|..||      ...||.:...| .|..|.:....:.|          |..:.:..:.:.
 Worm    66 FGNLAVTKRPA------HLRPPAAFCLPFVSMNNDLTSGHALK----------HITLTSVFDALH 114

  Fly   251 KYKGEPW-RKPDYPYGEGVIGLHEEIEHFYQYVLPTPCEHAIRNEVVKR--IEAVVH---SIWPQ 309
            .|...|: .:.|......|..:..             |..|.::::..|  :|..||   ....:
 Worm   115 PYVAMPYINRMDICSAMNVYWIRN-------------CLEAEQSDLFHRFALEMQVHLSACFGCR 166

  Fly   310 AVVEIFGSFRTGLFLPTSDIDLVVLGLWEKLPLRTLEFELVSRGIAEACT--VRVLDK----ASV 368
            .|::|:||.|.|......|:|: .|......|......:.|.|.:|:|..  .:.:|:    |.|
 Worm   167 VVLDIYGSTRNGFGTRFCDVDM-SLSFSPSPPSWATNSDRVMRAVAKALVDFPKAVDERYVNAKV 230

  Fly   369 PIIKLTDRETQVKVDISFNMQSGVQSAELIKKF-KRDYPVLEKLVLVLKQFLLLRDLNEVFTGGI 432
            ||::....:..::.|||:.....:.:.:|:::: |.|...|..|.:.:|.:.....:.:...|.:
 Worm   231 PIVRFRSSDMDMEADISYKNDLALHNTQLLQQYCKWDPERLPTLGVWVKAWAKRSGVGDASKGSL 295

  Fly   433 SSYSLILMCISFLQM--------------HPR---------GIYH----DT-------ANLGVLL 463
            |||:.|:|.|.:||.              |.:         ..|:    ||       |::..|.
 Worm   296 SSYAWIVMLIHYLQQVEPIPVLPCLQEMNHQKSENVYVQGYNTYYWKFVDTARTRRCRASVVDLF 360

  Fly   464 LEFFELYGRRFNYMKIGISIKNGGRYMPKDELQRDMVDGHRPSLLCIEDP------LTPGNDIGR 522
            :.|.:.|...|:|....|.:.:     .|.|.:.|....:.   :||.||      |..|.|:..
 Worm   361 VGFLDYYATYFDYSTNVIQMVS-----KKLEFKPDRWCKYP---MCIADPFETDHNLAQGVDMPM 417

  Fly   523 SSY 525
            ..|
 Worm   418 FEY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 27/120 (23%)
PAP_assoc 458..518 CDD:281779 14/65 (22%)
pup-2NP_498100.1 NT_PAP_TUTase 163..264 CDD:143392 23/101 (23%)
TRF4 <169..>414 CDD:227585 56/253 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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