DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf4-1 and pup-3

DIOPT Version :9

Sequence 1:NP_001259340.1 Gene:Trf4-1 / 31795 FlyBaseID:FBgn0030049 Length:1001 Species:Drosophila melanogaster
Sequence 2:NP_491621.1 Gene:pup-3 / 172207 WormBaseID:WBGene00019082 Length:482 Species:Caenorhabditis elegans


Alignment Length:481 Identity:102/481 - (21%)
Similarity:190/481 - (39%) Gaps:125/481 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 TTPASRTNSIYYNPSRKKRPENKAGGAHYYMNNHMEMIAKYKG---EPWRKPDYPYGEGVIGLHE 273
            |||........|.|...:.|:.:|     ..|...:.|.:..|   :...:.:..|.|..|  ::
 Worm    11 TTPRGPAPLALYCPEAPECPKLEA-----ISNLSFQQITQQAGTSNDQGFEFENTYVEHRI--NQ 68

  Fly   274 EIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSDIDLVVLGLWE 338
            |||.|    :.|..:..:| :...:..||:...:|.:...|.||:..|:.:.:||||..|     
 Worm    69 EIESF----VDTHHQEPLR-KAAAQFRAVMKQEYPDSTCFITGSYPAGVDIFSSDIDFTV----- 123

  Fly   339 KLPLRTLE-----FELVSRGIAEACTVRVLDKA-----SVPIIKLTDRETQVKVDISFNMQSGVQ 393
            |:|  |||     .:|:......:|...:..||     ::|:::|...||:|.:|::.:..:..:
 Worm   124 KVP--TLEGANPFLKLMQLRKELSCYYTIFSKAYVQKGNIPVLQLMHAETKVSIDVTIDNDTSKR 186

  Fly   394 SAELIKKFKR---DYPVLEKLVLVLKQFLLLRDLNEVFTGGISSYSLILMCISFLQ--------- 446
            :.:|:..:.:   .:|:|.|   .:|.:.....:.....|.::|:||.||.|.:||         
 Worm   187 NTQLLAFYSQLDTRFPLLCK---AMKAWAASCGVEGASRGRLNSFSLCLMLIHYLQTVQVLLNIQ 248

  Fly   447 -MHP------------------------RGIY---HDTANLGVLLLEFFELYGRRFNYMKIGISI 483
             :.|                        :|.:   .:|::|.||.:.|.:.|. .||:....|||
 Worm   249 EIFPELNGDIVVEDDNYMKRDLKIEILEKGAFDFNQNTSSLAVLFIGFMKYYS-EFNFKWNWISI 312

  Fly   484 KNGG--------RYMPKDELQRDMVDGHRPSLLCIEDPL--TPGNDIG--RSSYGVFQVQQAFKC 536
            |:|.        ..:||:.:.:|.      ..:.:.|||  .|.|..|  |....:.::|..|:.
 Worm   313 KHGNVLKKKWSKTRVPKNGMPKDC------RFIVVADPLLEIPRNCAGTVRQQNYMERIQLEFRE 371

  Fly   537 AYRVLALAVSPLNLLGIDPRVNSILGRIIHITDDVIDYREWIRENFEHLVVVD-----RISPLPT 596
            .|..:....:..||...:      ..|.:.        :|.:..:.:.:::.|     ||:.|||
 Worm   372 EYERILKRKTIFNLYQCN------WSRKLR--------KEGMERDLQIMILQDELRKLRIANLPT 422

  Fly   597 ------------AAPTAYATANGAPK 610
                        .:|..::..|..||
 Worm   423 EEEVPWGTVVDFTSPRTFSPTNQHPK 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf4-1NP_001259340.1 NT_PAP_TUTase 291..401 CDD:143392 29/119 (24%)
PAP_assoc 458..518 CDD:281779 19/69 (28%)
pup-3NP_491621.1 TRF4 90..>374 CDD:227585 68/300 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5260
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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