DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32221 and SKIP2

DIOPT Version :9

Sequence 1:NP_730456.2 Gene:CG32221 / 317924 FlyBaseID:FBgn0052221 Length:432 Species:Drosophila melanogaster
Sequence 2:NP_569047.1 Gene:SKIP2 / 836860 AraportID:AT5G67250 Length:527 Species:Arabidopsis thaliana


Alignment Length:399 Identity:82/399 - (20%)
Similarity:150/399 - (37%) Gaps:124/399 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DLDPSSLLFIFKLLSLEDQLHLARCCR--IFRDAFLRLHRHDFQDVVDKDMSIRTLEDWRTFLWL 71
            ||....|..:|:.|...|:...:..|:  :..|...| ||          :|:...::..:||  
plant    45 DLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSR-HR----------LSLDAKDEISSFL-- 96

  Fly    72 CGSRIGTLESHFDDDHPLQLLPMISRHCYRLKSISIYNATVARAQPYLLRMSSLEKVHVR----- 131
                 .::.:.||....|.|      .|.| ||:|:.:..:|...   :|..:|.:|.:|     
plant    97 -----TSMFNRFDSVTKLAL------RCDR-KSVSLSDEALAMIS---VRCLNLTRVKLRGCREI 146

  Fly   132 ------NYKSTSKDLIK---------AIGIHLPRVNSLSLESFERKELQEVRQFSEMLELGLYDD 181
                  ::....|:|.|         |.|::....:...||....|.|:.:.:.:|::.|.  ||
plant   147 TDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLP--DD 209

  Fly   182 VTASEFATI--------------------VKPMRKLRCL--------QLRNAKRFLTTSNLRMLA 218
            .::|...:|                    :|.::.:|||        .:.|.|..|:..      
plant   210 ASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKSSLSEI------ 268

  Fly   219 TNCRHLEKLTFNDCDADLLVLPQFVNLKYLQLYCSEDMKTRLFKALAKSQCS-IQLEYLILHRKR 282
                |||:|..:  |..|..:.:..|::.|.:     :||        .:|| ..|.|:      
plant   269 ----HLERLQVS--DIGLSAISKCSNVETLHI-----VKT--------PECSNFGLIYV------ 308

  Fly   283 WIDEEQAQYISALKCLRWLVCKPRDDLCVHHLAKLSRLECLSIQSAREIG--ETQLSL--LVANN 343
               .|:.:.:..|....|...:..|:    .|..::: .||::|....||  .|.:||  :.:|.
plant   309 ---AERCKLLRKLHIDGWRTNRIGDE----GLLSVAK-HCLNLQELVLIGVNATHMSLAAIASNC 365

  Fly   344 ERLRYLNIC 352
            |:|..|.:|
plant   366 EKLERLALC 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32221NP_730456.2 leucine-rich repeat 197..223 CDD:275381 6/33 (18%)
leucine-rich repeat 224..244 CDD:275381 5/19 (26%)
leucine-rich repeat 245..272 CDD:275381 5/27 (19%)
leucine-rich repeat 273..297 CDD:275381 4/23 (17%)
leucine-rich repeat 298..319 CDD:275381 3/20 (15%)
leucine-rich repeat 320..345 CDD:275381 9/28 (32%)
leucine-rich repeat 346..372 CDD:275381 3/7 (43%)
SKIP2NP_569047.1 F-box-like 45..>73 CDD:403981 7/27 (26%)
AMN1 82..295 CDD:187754 49/258 (19%)
leucine-rich repeat 106..128 CDD:275381 8/28 (29%)
leucine-rich repeat 135..160 CDD:275381 3/24 (13%)
leucine-rich repeat 161..185 CDD:275381 4/23 (17%)
leucine-rich repeat 239..264 CDD:275381 6/24 (25%)
leucine-rich repeat 265..288 CDD:275381 7/34 (21%)
leucine-rich repeat 289..314 CDD:275381 8/46 (17%)
AMN1 <311..>416 CDD:187754 17/69 (25%)
leucine-rich repeat 315..342 CDD:275381 5/31 (16%)
leucine-rich repeat 343..367 CDD:275381 7/23 (30%)
leucine-rich repeat 368..393 CDD:275381 3/7 (43%)
leucine-rich repeat 394..418 CDD:275381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
10.960

Return to query results.
Submit another query.