DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrg and ncam2

DIOPT Version :9

Sequence 1:NP_001245581.1 Gene:Nrg / 31792 FlyBaseID:FBgn0264975 Length:1309 Species:Drosophila melanogaster
Sequence 2:XP_012811963.1 Gene:ncam2 / 100151722 XenbaseID:XB-GENE-1217730 Length:865 Species:Xenopus tropicalis


Alignment Length:993 Identity:195/993 - (19%)
Similarity:346/993 - (34%) Gaps:304/993 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 WSKDGQRIQWSDRITQGHYG--KSLVIRQTNFDDAGTYTCDVSNGVGNAQSFSIILNV------N 336
            ::..|::|....|:.....|  ..|.|.:.|.||||.|.|..::..|:||..:::|.:      .
 Frog    83 FNPQGEKIISGQRVVVQREGIRSWLTIYKANVDDAGIYRCQATDSKGHAQEATVVLEIYQKLTFE 147

  Fly   337 SVPYFTKEPEIATAAEDEEVVFECRAAGVPEPKISWIHNGKPIEQSTPNPRRTVTDNTIRIINLV 401
            .||    .|:.....|:.||:  |..:..|.|.:.|::|.:.:..........:.:|.::|.|:.
 Frog   148 DVP----SPQEFKRGENAEVL--CLVSSSPAPMVRWLNNREDVTDIDDRRFAMLPNNNLQIKNIS 206

  Fly   402 KGDTGNYGCNATNSL-GYV-YKDVYLNVQAEPPTISEAPAAVSTVDG-RNVTIKCRVNGSPKPLV 463
            |.|.|.|.|.....: |.: ::|:.:.|...|..:::..:..:|.|. .::|:.||..|||||.:
 Frog   207 KRDEGIYRCEGRVEVRGEIDFRDISVIVNVPPEILAQQRSFNATADRLEDITLFCRATGSPKPYI 271

  Fly   464 KWLRASNWL-TGGRYNV-QANGDLEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVKEHTRITQE 526
            .|.|....: ...:|:: :.|.:|.::::..:|:|.|.|.|.||.|..:....|.|.....|.|.
 Frog   272 TWHRNGKLVEENEKYDLREDNTELTVKNIISTDSGLYVCRATNKAGFTEKQSFLQVFVQPHIVQL 336

  Fly   527 PQNYEVAAGQSATFRCNEAHDDTLEIEIDWWKDGQSIDF----EAQPRFVKT----NDNSLTIAK 583
            .....:..|. .|..| ||..:.:. ||.|.:....:.|    ::|...:::    ..:||.|..
 Frog   337 QNETTIEHGH-VTLTC-EAEGEPIP-EITWKRSSDGMIFYDGDKSQDGRIESTGHHGKSSLHIKS 398

  Fly   584 TMELDSGEYTCVARTRLDEATARANLIVQDVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYT 648
            .|..|:|.|.|.|.:|:.   .....:..::..|||.                       |.:.|
 Frog   399 VMLSDAGRYDCEAASRIG---GHQKSMYLNIEYAPKF-----------------------ISNQT 437

  Fly   649 IQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVP 713
            |.:       ||:                                                    
 Frog   438 IYY-------SWE---------------------------------------------------- 443

  Fly   714 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRD---IPAAAWENNNIFDWRQNNI 775
             .||.|:                ..::..|.|:..|   |.||   :||.  ...||..:|....
 Frog   444 -NNPINI----------------SCDVTSNPPSSIY---WSRDKLLLPAR--NITNIKTYRDGKR 486

  Fly   776 VIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDRPLDAPTNFTMRQITSSTSGYMAWTPV 840
            ::.:        |..::.||.|..|..|...:|...::..|      |:..:.||          
 Frog   487 ILLE--------ITPLSDNDFGRYNCTAINSIGSRIQEYIL------TLADVPSS---------- 527

  Fly   841 SEESVRGHFKGYKIQTWTENEGEEGLREIHVKGDTHNALVTQFKPDSKNYARILAYNGRFNGPPS 905
                                  ..|||.|.:               |:.||::.     ||.|  
 Frog   528 ----------------------PYGLRVIEL---------------SQTYAKVF-----FNKP-- 548

  Fly   906 AVIDFDTPEGVPSPVQGLDAYPLGSSAFMLHWKKPLYPNGKLTGYKIYYEEVKESYVGERREYDP 970
                 |:..|||                 :|            .|::.::||........|.:..
 Frog   549 -----DSHGGVP-----------------IH------------HYQMDFKEVSSEIWKVVRSHGT 579

  Fly   971 HITDPRVTRMKMAGLKPNSKYRISITATTKMGEGSEHYIEKTTLKDAVNV-APATPSFSWEQLPS 1034
            .      |.:.:..|..|:.|.:.:.|....|:|.   ..||.:...:.| .|:.||...:    
 Frog   580 Q------TIIVLGNLDANTTYEVKVAAVNGKGKGE---YSKTEIFQTLPVREPSPPSIHGQ---- 631

  Fly  1035 DNGLAKFRINWLPSTE-GHPGTHFFTMHRIKG-ETQWIRENEEKNSDYQEVGGLDPETAYEFRVV 1097
            ..|...|:::.....: |.|..::...:|.|. |.||:.:....|.||..:..|.....||..::
 Frog   632 PGGGKSFKLSITKQDDGGAPILNYVVKYRSKDKEDQWLEKKFLGNKDYIILDHLQWNVGYEVHII 696

  Fly  1098 SVD--GHFNTESATQEIDTNTVEGPIMVANETVANAGWFIGMMLALAFIIILFIII--------- 1151
            :.:  ||    |.....:......|.::|:...:..|  :|.::.||...:|.:::         
 Frog   697 ATNRLGH----SEPTVFEFLMPPKPNIIADTLFSGLG--VGAVIGLAVAALLLVLVVTDVSCFFI 755

  Fly  1152 -------CIIRRNRG------GKYDVHDRELANGRRDYPEEGGFHEYSQPL-----DNKSAGRQS 1198
                   ||.||..|      ||    .:||..|:..|.::|.    .:|:     :::......
 Frog   756 RQCGLLMCITRRICGKKSGSSGK----SKELEEGKAAYLKDGS----KEPIVEMRTEDERVTNHD 812

  Fly  1199 VSSANKPGVESDTDSMAE 1216
            .|..|:|   ::|..:.|
 Frog   813 GSPVNEP---NETTPLTE 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrgNP_001245581.1 Ig 55..128 CDD:299845
IG_like 57..127 CDD:214653
Ig 135..214 CDD:299845
IG_like 141..216 CDD:214653
ig 251..332 CDD:278476 16/53 (30%)
I-set 339..427 CDD:254352 20/89 (22%)
Ig 354..427 CDD:299845 17/74 (23%)
I-set 432..517 CDD:254352 24/87 (28%)
Ig 446..517 CDD:299845 22/73 (30%)
I-set 522..611 CDD:254352 22/96 (23%)
ig 525..609 CDD:278476 21/91 (23%)
FN3 613..707 CDD:238020 8/93 (9%)
FN3 716..807 CDD:238020 20/93 (22%)
fn3 817..905 CDD:278470 13/87 (15%)
FN3 917..1004 CDD:238020 12/86 (14%)
FN3 1041..1111 CDD:238020 17/73 (23%)
Bravo_FIGEY 1155..>1221 CDD:290593 16/73 (22%)
ncam2XP_012811963.1 Ig 50..141 CDD:386229 17/57 (30%)
IG_like 150..234 CDD:214653 20/89 (22%)
Ig 237..330 CDD:386229 26/92 (28%)
Ig 329..426 CDD:386229 22/102 (22%)
IG_like 442..520 CDD:214653 23/165 (14%)
FN3 525..617 CDD:238020 30/188 (16%)
fn3 623..706 CDD:365830 21/90 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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