DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn75F and srp-3

DIOPT Version :9

Sequence 1:NP_001036614.1 Gene:Spn75F / 317912 FlyBaseID:FBgn0052203 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_503528.2 Gene:srp-3 / 178672 WormBaseID:WBGene00005644 Length:362 Species:Caenorhabditis elegans


Alignment Length:351 Identity:73/351 - (20%)
Similarity:153/351 - (43%) Gaps:52/351 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LSKGRLARNF-----------VYSPIAIRQALGLLYLSKDNVTDQQLESALQLTGLNQEEIISLF 83
            :::.|.|.||           |:||::|...|.|::......:..|:.:.| |:|...|:::..|
 Worm     4 VAERRFALNFLNTLPVHNESLVFSPLSIALVLSLVHTGVRGSSRDQIRNTL-LSGATDEQLVEHF 67

  Fly    84 ----KEAREKVAQEQFTMGNRIYLSPDYNASPN-ITQLSENLGVEVKNMTFSGDQSAASEIKKWL 143
                ||.:......:..:.|::||...:..:|. ::...:|.|.:.|::..: ..:|..||..::
 Worm    68 SFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLSTALKNYGADAKSLDLT-TPAAVQEINSFV 131

  Fly   144 NKWIGKAGGNLFGKNDISQTTQIVAVQGMSYSCVWKNR--ETALTNRTFTLLRQNKKPFVYTTQM 206
            |........|:..::.|.....:: :..:.:...|.::  ..:::.:.|||....||...:..:.
 Worm   132 NTATNGKIKNIATQDSIKDAIALL-INSIYFKADWDDKFDGMSVSEQDFTLHTGEKKKIKFMKEF 195

  Fly   207 MYTEAPMDFFNNDQVRGVM-VPFKNSDMGMLVLLPRPRYSTQQILYSL-----DTILKIKLRRSK 265
            |...:    |::|.|..|: |.:.:......|.||:.|.|.::.|..|     :.:||.|.|...
 Worm   196 MNDRS----FSSDDVFDVLHVAYSDQRYQFSVFLPKLRNSLKEALKKLNEKRFNDLLKTKKRTFM 256

  Fly   266 KTHLFLPKFKVSESVDLNMALKALGIQNLFTNTNAANFKQYNSFDADQNRVLMTIDVGDDFDDRV 330
            .|.  ||||.:.:.::|...|:.|||.::|:::            ||.:.:...:.:.:.....:
 Worm   257 NTQ--LPKFTIEKDLNLKSHLQTLGITDIFSDS------------ADLSGLAENLKISEGVHKAI 307

  Fly   331 VYVNRGFVFVVKDKSTIYMIGRMDAV 356
            :.||       ::.:|...:..|.||
 Worm   308 IEVN-------EEGTTAAAVTMMKAV 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn75FNP_001036614.1 SERPIN 21..353 CDD:294093 70/346 (20%)
srp-3NP_503528.2 serpinL_nematode 5..360 CDD:381047 73/350 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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