DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn75F and srp-1

DIOPT Version :9

Sequence 1:NP_001036614.1 Gene:Spn75F / 317912 FlyBaseID:FBgn0052203 Length:356 Species:Drosophila melanogaster
Sequence 2:NP_503315.1 Gene:srp-1 / 178585 WormBaseID:WBGene00005642 Length:366 Species:Caenorhabditis elegans


Alignment Length:374 Identity:82/374 - (21%)
Similarity:152/374 - (40%) Gaps:72/374 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 FEINLTKQLSKGRLARNFVYSPIAIRQALGLLYLSKDNVTDQQLESALQLTGLNQEEIISLF--- 83
            |.|.|...|:..:|. ..|:||::|..:|.|::|.....|...:.::: :.|...|:.|..|   
 Worm    15 FGIKLLSDLTSDQLT-PCVFSPVSILLSLALVHLGAKGHTRHDIRNSV-VNGSTDEQFIEHFSFI 77

  Fly    84 -KEAREKVAQEQFTMGNRIYLSPDYNASPNIT-QLSENLGVEVKNMTFSGDQSAASEIKKWLNKW 146
             |.....|...:..:.||:::||:.......| :|.|:...|...:.|...|.||    |.:|::
 Worm    78 NKLLNSSVNDVETLIANRLFVSPEQAIRKAFTDELREHYNAETATIDFKKSQEAA----KIMNQF 138

  Fly   147 I-----GKAGGNLFGKNDISQTTQIVAVQGMSYSCVWKNR--ETALTNRTFTLLRQNKKPFVYTT 204
            |     ||....:  |.|..:....:.:..:.:...|:.:  |.|.:|.:.:.......|.:..|
 Worm   139 ISESTKGKIPDMI--KPDNLKDVDAILINAIFFQGDWRRKFGEPAESNFSISATENRLVPMLRET 201

  Fly   205 QMMYTEAPMDFFNN--DQVRGVMVPFKNSDMGMLVLLPRPRYSTQQILYSLDTI-LKIKLRRSKK 266
            :        |:|.|  |:.:.:.:|||:......:.||..|::..:.|.||:.. ....:....:
 Worm   202 R--------DYFYNKDDEWQVIGIPFKDKSAWFAIFLPTRRFALAENLKSLNAAKFHNLINNVYQ 258

  Fly   267 THLFL--PKFKVSESVDLNMALKALGIQNLFT----------------------------NTNAA 301
            .::||  ||||:...::|..||...|:..|||                            .|.||
 Worm   259 EYIFLTFPKFKMDYKINLKTALAKFGLAELFTEQADLSGIGPGLQLASATHQALIEVDQVGTRAA 323

  Fly   302 NFKQYNSFDADQNRVLMTIDVGDDFDDRVVYVNRGFVF-VVKDKSTIYM 349
                    .|.:.::..|....|  :...:.|:..|:| ::||.|.:::
 Worm   324 --------AATEAKIFFTSASSD--EPLHIRVDHPFLFAIIKDNSPLFL 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn75FNP_001036614.1 SERPIN 21..353 CDD:294093 82/374 (22%)
srp-1NP_503315.1 serpinL_nematode 11..365 CDD:381047 82/374 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.