DRSC/TRiP Functional Genomics Resources

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Protein Alignment otu and Otud6b

DIOPT Version :10

Sequence 1:NP_511089.2 Gene:otu / 31789 FlyBaseID:FBgn0003023 Length:853 Species:Drosophila melanogaster
Sequence 2:XP_038965351.1 Gene:Otud6b / 297911 RGDID:1310024 Length:333 Species:Rattus norvegicus


Alignment Length:160 Identity:34/160 - (21%)
Similarity:61/160 - (38%) Gaps:29/160 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 SGSRQ-APDPYDQYLESRGLYRKHTARDASSLFRVIAEQM--YDTQMLHYEIRLECVRFMTLKRR 72
            ||:|. ..:...|.|.:|.|..||...|...::..:.:|:  .|:.:....:|.:...:|.....
  Rat   159 SGARHLESEKLAQILAARELEIKHIPSDGHCMYGALEDQLREQDSALTVATLRRQTAEYMQSHSD 223

  Fly    73 IF----------EKEIPGDFDSYMQDMSKPKTYGTMTELRAMSCLYRR----------NVILYEP 117
            .|          :...|.:|..|..|:.....:|...||||:|.:.:.          .:|:.|.
  Rat   224 DFLPFLTNPNTGDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILKTPIEILQADAPPIIVGEE 288

  Fly   118 YNMGTSVVFNRRYAENFRVFFNNENHFDSV 147
            |.....|:...|:|      :....|::||
  Rat   289 YPRNPLVLVYMRHA------YGLGEHYNSV 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
otuNP_511089.2 OTU_ALG13-like 21..149 CDD:438590 31/149 (21%)
Tudor_TDRD13-like 336..389 CDD:410451
Otud6bXP_038965351.1 COG4913 <33..>101 CDD:443941
OTU_OTUD6 169..313 CDD:438598 31/150 (21%)
Blue background indicates that the domain is not in the aligned region.

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