DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nxf3 and Nxf2

DIOPT Version :10

Sequence 1:NP_729938.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001276664.1 Gene:Nxf2 / 83454 MGIID:1933192 Length:691 Species:Mus musculus


Alignment Length:619 Identity:137/619 - (22%)
Similarity:240/619 - (38%) Gaps:156/619 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LDTISSTEEDHRVATVTGWSTVNIANCAGVSNSSIFVALKWVMMPIKVEIFNFKRSG--PED--- 120
            ||..:.|||.        |..|.|.:......:       |:|..|:    ||....  |.|   
Mouse   115 LDAENETEEK--------WYKVTIPSGRKYEKT-------WLMRSIQ----NFCSEPFIPVDFHY 160

  Fly   121 NMARGQFLLDNLLSANRLK----RLQEEVAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQE 181
            :..:.:|.:.|..:|:.||    |:.:|     |.:||.:.|:|.:....:..:.|.|....|:|
Mouse   161 DKTQARFFVQNAKTASALKDVSYRICDE-----TSRKIAIFVSPSVVPYSVQNKFTSEQMEYIRE 220

  Fly   182 ALRSRYEVDSRTLDLSRFHASPE---------LSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVL 237
            ::.:||:...:.|||.:|....:         |:...|.:..::::::.:       |.:.||.|
Mouse   221 SMMNRYDASQKALDLEKFRFDQDLMDKDIDMMLNRRSCMVATLQIIQSDI-------PELLSLNL 278

  Fly   238 SNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVD---- 298
            :||.|..|...:..::....::.|::|.|:::...||..:.:|..:.::|.||......:|    
Mouse   279 TNNKLYQLDGLSDMTEKAPHVKILNLSRNKLKSFTELEKVKELKLEELWLEGNPFCNCFLDHFEY 343

  Fly   299 --VIRKMLPQLKNVHG-----------------------------CVQLGESTEAVDNIPKSQQL 332
              .|..:.|:|..:.|                             .|..|...:..|.|..:...
Mouse   344 ISTIHDLFPKLLRLDGEDIIVPKRNLQNGKGLIVPTRNLQNGKDLIVPTGNPQDGKDLIVPTGNP 408

  Fly   333 Q---------GGGTNGLKF-------------CQD--------------FISSYYTFFDDTEERF 361
            |         |...:|...             |::              |:..||.|:|: .:|.
Mouse   409 QDGKDLIVPTGNPQDGKDLIVPTKMDIEVPQPCKESCNTSEVIKNLVLQFLKEYYLFYDN-GDRL 472

  Fly   362 KLKKYYDDQAMFSLSVPV-----QLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRL 421
            :|...|.|||.||||||.     .||.:..|..|:|:.|||..|..:...|:..:..::.:||.|
Mouse   473 RLLDAYHDQACFSLSVPFDVSDPNLNNLEEYFKYSRDLKRQQDSSMRMQLLKHTKHDIVNSLSLL 537

  Fly   422 PLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLE-PRRFQRTFVL------QTSNSPGWL 479
            |....||.:..:|:.:.|..:..|::.|.|.|:...... .|.|.|.|:.      :..:|....
Mouse   538 PKTQHDLCSFLVDLFLHTEMMLCFSVNGLFMEVEGKCRGCIRAFTRIFIAIPCSDSRVHSSFRIC 602

  Fly   480 ITNDMLCITSTMPDPKKTIKFKPETNMINTDPSVEKINKPAVTVLDRKSKEDVQISRPLSGKELN 544
            |.||.|.:.:..|   |.|: |..|::    |:.:...||   :|..:.:|.|:.....||.:|:
Mouse   603 IMNDELIVRNASP---KEIQ-KAFTSL----PAPDTSFKP---LLSEEQQEMVKSFSVQSGMKLD 656

  Fly   545 PLNKAVQK------------MSLSQVDHLPSENF 566
            ...|.:|.            .:|.....:|.|.|
Mouse   657 WSQKCLQDNEWDYTKAGEAFTALQNEGKIPKEFF 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_729938.2 leucine-rich repeat 191..231 CDD:275382 6/48 (13%)
LRR <229..>300 CDD:443914 18/76 (24%)
leucine-rich repeat 232..257 CDD:275382 7/24 (29%)
leucine-rich repeat 258..281 CDD:275382 5/22 (23%)
NTF2_like 338..489 CDD:471850 50/189 (26%)
Nxf2NP_001276664.1 Tap-RNA_bind 125..204 CDD:462696 22/94 (23%)
leucine-rich repeat 230..272 CDD:275382 6/48 (13%)
leucine-rich repeat 273..298 CDD:275382 7/24 (29%)
leucine-rich repeat 299..322 CDD:275382 5/22 (23%)
leucine-rich repeat 323..353 CDD:275382 5/29 (17%)
NTF2_like 451..606 CDD:471850 45/155 (29%)
TAP_C 630..691 CDD:197882 14/64 (22%)

Return to query results.
Submit another query.