DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nxf3 and Nxf2

DIOPT Version :9

Sequence 1:NP_001287064.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001276664.1 Gene:Nxf2 / 83454 MGIID:1933192 Length:691 Species:Mus musculus


Alignment Length:619 Identity:137/619 - (22%)
Similarity:240/619 - (38%) Gaps:156/619 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 LDTISSTEEDHRVATVTGWSTVNIANCAGVSNSSIFVALKWVMMPIKVEIFNFKRSG--PED--- 120
            ||..:.|||.        |..|.|.:......:       |:|..|:    ||....  |.|   
Mouse   115 LDAENETEEK--------WYKVTIPSGRKYEKT-------WLMRSIQ----NFCSEPFIPVDFHY 160

  Fly   121 NMARGQFLLDNLLSANRLK----RLQEEVAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQE 181
            :..:.:|.:.|..:|:.||    |:.:|     |.:||.:.|:|.:....:..:.|.|....|:|
Mouse   161 DKTQARFFVQNAKTASALKDVSYRICDE-----TSRKIAIFVSPSVVPYSVQNKFTSEQMEYIRE 220

  Fly   182 ALRSRYEVDSRTLDLSRFHASPE---------LSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVL 237
            ::.:||:...:.|||.:|....:         |:...|.:..::::::.:       |.:.||.|
Mouse   221 SMMNRYDASQKALDLEKFRFDQDLMDKDIDMMLNRRSCMVATLQIIQSDI-------PELLSLNL 278

  Fly   238 SNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKLSVD---- 298
            :||.|..|...:..::....::.|::|.|:::...||..:.:|..:.::|.||......:|    
Mouse   279 TNNKLYQLDGLSDMTEKAPHVKILNLSRNKLKSFTELEKVKELKLEELWLEGNPFCNCFLDHFEY 343

  Fly   299 --VIRKMLPQLKNVHG-----------------------------CVQLGESTEAVDNIPKSQQL 332
              .|..:.|:|..:.|                             .|..|...:..|.|..:...
Mouse   344 ISTIHDLFPKLLRLDGEDIIVPKRNLQNGKGLIVPTRNLQNGKDLIVPTGNPQDGKDLIVPTGNP 408

  Fly   333 Q---------GGGTNGLKF-------------CQD--------------FISSYYTFFDDTEERF 361
            |         |...:|...             |::              |:..||.|:|: .:|.
Mouse   409 QDGKDLIVPTGNPQDGKDLIVPTKMDIEVPQPCKESCNTSEVIKNLVLQFLKEYYLFYDN-GDRL 472

  Fly   362 KLKKYYDDQAMFSLSVPV-----QLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRL 421
            :|...|.|||.||||||.     .||.:..|..|:|:.|||..|..:...|:..:..::.:||.|
Mouse   473 RLLDAYHDQACFSLSVPFDVSDPNLNNLEEYFKYSRDLKRQQDSSMRMQLLKHTKHDIVNSLSLL 537

  Fly   422 PLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLE-PRRFQRTFVL------QTSNSPGWL 479
            |....||.:..:|:.:.|..:..|::.|.|.|:...... .|.|.|.|:.      :..:|....
Mouse   538 PKTQHDLCSFLVDLFLHTEMMLCFSVNGLFMEVEGKCRGCIRAFTRIFIAIPCSDSRVHSSFRIC 602

  Fly   480 ITNDMLCITSTMPDPKKTIKFKPETNMINTDPSVEKINKPAVTVLDRKSKEDVQISRPLSGKELN 544
            |.||.|.:.:..|   |.|: |..|::    |:.:...||   :|..:.:|.|:.....||.:|:
Mouse   603 IMNDELIVRNASP---KEIQ-KAFTSL----PAPDTSFKP---LLSEEQQEMVKSFSVQSGMKLD 656

  Fly   545 PLNKAVQK------------MSLSQVDHLPSENF 566
            ...|.:|.            .:|.....:|.|.|
Mouse   657 WSQKCLQDNEWDYTKAGEAFTALQNEGKIPKEFF 690

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_001287064.2 leucine-rich repeat 191..231 CDD:275382 6/48 (13%)
PPP1R42 <192..296 CDD:411060 23/112 (21%)
leucine-rich repeat 232..257 CDD:275382 7/24 (29%)
leucine-rich repeat 258..281 CDD:275382 5/22 (23%)
NTF2_like 338..489 CDD:415585 50/189 (26%)
Nxf2NP_001276664.1 Tap-RNA_bind 123..204 CDD:286271 23/104 (22%)
leucine-rich repeat 230..272 CDD:275382 6/48 (13%)
LRR_4 271..317 CDD:289563 13/45 (29%)
leucine-rich repeat 273..298 CDD:275382 7/24 (29%)
leucine-rich repeat 299..322 CDD:275382 5/22 (23%)
leucine-rich repeat 323..353 CDD:275382 5/29 (17%)
NTF2_like 451..606 CDD:298832 45/155 (29%)
TAP_C 630..691 CDD:197882 14/64 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1051093at2759
OrthoFinder 1 1.000 - - FOG0000862
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10662
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.