DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nxf3 and Nxf1

DIOPT Version :9

Sequence 1:NP_001287064.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_058093.2 Gene:Nxf1 / 53319 MGIID:1858330 Length:618 Species:Mus musculus


Alignment Length:455 Identity:108/455 - (23%)
Similarity:193/455 - (42%) Gaps:49/455 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 RGQFLLDNLLSANRLKRLQEEVAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYE 188
            |..|.:::..:|:.||.:..::..... ::|.:.:....|...:..::..|....::..:..||:
Mouse   157 RAHFFVEDATTASALKGVNHKIQDREN-RRISIIINASAPPYTVQNELKPEQIEQLKLIMSKRYD 220

  Fly   189 VDSRTLDLSRFHASPE---------LSLHFCPLHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCS 244
            .:.:.|||....:.|:         |:...|....::::|..:       |.:.||.||:|.|..
Mouse   221 GNQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENI-------PELLSLNLSSNRLYK 278

  Fly   245 LKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGN------GLAKLSVDVIRKM 303
            |...:...|...:|:.|::|.|.::...||:.|..|..:.::|..|      |.....:..||:.
Mouse   279 LDDMSSIVQKAPNLKTLNLSGNELKTERELDKIKGLKLEELWLDRNPMCDNFGDQSSYISAIRER 343

  Fly   304 LPQLKNVHG---CVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQDFISSYYTFFDDTEERFKLKK 365
            .|:|..:.|   ...:....||...:|..:....|..|.......|:..||..:|..:.:..|..
Mouse   344 FPKLLRLDGHELPPPISFDVEAPTMLPPCKGSYFGTENLKSLVLRFLQQYYVIYDSGDRQGLLYA 408

  Fly   366 YYDDQAMFSLSV------PVQLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRLPLM 424
            |:|. |..|||:      ||:.| :..|...:||.|:......:...|:..|..::..|:.||..
Mouse   409 YHDG-ACCSLSIPYNPQNPVRKN-LAEYVKDSRNVKKLKEPTQRFRLLKHTRLNVVAFLNELPKT 471

  Fly   425 HTDLENVGLDIQVFTSSLRIFTLTGYFKEI---SSDTLEPRRFQRTFVLQTSNSPGWLITNDMLC 486
            ..|:....:||...||:|..|::.|.|||:   |.|:|  |.|.|||:...:::.|..|.||.|.
Mouse   472 QHDVNAFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSL--RAFTRTFIAVPASNSGLCIVNDELF 534

  Fly   487 ITSTMPDPKKTIKFKPETNMINTDPSVEKINKPAVTVLDRKSKEDVQISRPLSGKELNPLNKAVQ 551
            :.:..|:     :.:....|....||    :.| |..|..:.:|.:|.....||..|....|.:|
Mouse   535 VRNASPE-----EIQRAFAMSAPTPS----SSP-VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQ 589

  Fly   552  551
            Mouse   590  589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_001287064.2 leucine-rich repeat 191..231 CDD:275382 7/48 (15%)
PPP1R42 <192..296 CDD:411060 27/118 (23%)
leucine-rich repeat 232..257 CDD:275382 8/24 (33%)
leucine-rich repeat 258..281 CDD:275382 7/22 (32%)
NTF2_like 338..489 CDD:415585 48/159 (30%)
Nxf1NP_058093.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..113
Interaction with ALYREF/THOC4 and LUZP4. /evidence=ECO:0000250|UniProtKB:Q9UBU9 2..197 7/40 (18%)
RNA-binding (RBD). /evidence=ECO:0000250 2..117
Minor non-specific RNA-binding. /evidence=ECO:0000250 2..59
Major non-specific RNA-binding. /evidence=ECO:0000250 60..117
RNA binding. /evidence=ECO:0000250 60..117
Nuclear localization signal. /evidence=ECO:0000250 66..99
Nuclear export signal. /evidence=ECO:0000250 82..109
Tap-RNA_bind 115..197 CDD:286271 7/40 (18%)
leucine-rich repeat 223..265 CDD:275382 7/48 (15%)
LRR_8 264..326 CDD:290566 19/61 (31%)
LRR 1 265..290 8/24 (33%)
leucine-rich repeat 266..291 CDD:275382 8/24 (33%)
LRR_4 290..328 CDD:289563 10/37 (27%)
LRR 2 291..314 7/22 (32%)
leucine-rich repeat 292..315 CDD:275382 7/22 (32%)
LRR 3 315..342 4/26 (15%)
leucine-rich repeat 316..346 CDD:275382 5/29 (17%)
LRR 4 343..370 5/26 (19%)
NTF2 381..537 CDD:238403 48/159 (30%)
TAP_C 555..617 CDD:197882 11/40 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000862
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10662
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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