DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nxf3 and Nxf7

DIOPT Version :10

Sequence 1:NP_729938.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:NP_001032293.1 Gene:Nxf7 / 501621 RGDID:1566170 Length:614 Species:Rattus norvegicus


Alignment Length:610 Identity:134/610 - (21%)
Similarity:224/610 - (36%) Gaps:112/610 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 HEPDS-RLIQNFKKHVNSQSPLDDLRKNLNEKSKIREYVQELIGNEQQMGSVLDTISSTEEDHRV 73
            |.|.| |.....::||..|..:...|....:|.::.::.::                        
  Rat    66 HTPYSGRRKSREEEHVEDQIHITVWRDEKAQKREVEQFTED------------------------ 106

  Fly    74 ATVTGWSTVNIANCAGVSNSSIFVALKWVMMPIKVEIFNFKRS------GPED---NMARGQFLL 129
            .|:..|..|.|. |....:              |.::.|...|      .|.|   :..|.||.:
  Rat   107 GTLESWFKVTIP-CGRKCD--------------KTQLMNSVHSLCSVPFTPVDFHCDKYRIQFFV 156

  Fly   130 DNLLSANRLKRLQEEVAVINTCQKIEVRVTPGLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTL 194
            .:...|..||.:..::: ....:||.:.|.|.:....:..:.|.|....::.|::.||::....|
  Rat   157 QDSSIAYALKDVSYKIS-SEDFEKIPIFVNPSVAPYSVQNRFTREQMEQLKLAMKKRYDISQHAL 220

  Fly   195 DLSRFHASPELSLHFCP--LHMVKLLETVLVLSNHLFPHVTSLVLSNNYLCSLKAFAGNSQSFAS 257
            .|.:....|:|..|...  |:....:...|.:....||.:.||.||:|.|..|.:.....:....
  Rat   221 CLKKLRFDPDLMNHNIDMILNRRSCMTATLQIIQEDFPKLLSLNLSSNKLFQLDSLFDVVKKAPK 285

  Fly   258 LERLDISANRIQDLGELNYINKLSCKTIFLAGNGLAKL------SVDVIRKMLPQLKNVHG---C 313
            |:.|::|.|.::...||..|..|..:.::|.||.|...      .|..|.:..|||..:.|   .
  Rat   286 LKILNLSKNMLRTAWELEKIRGLKLEQLWLEGNPLCSTFPDHSSYVSAILEYFPQLSCLDGRKLP 350

  Fly   314 VQLGESTEAVDNIPKSQQLQGGGTNGLK-FCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSV 377
            :..|...|. ..:.|.::....|:..:| ..|.|:..||..: |:|||..|...|.:||.|||::
  Rat   351 LSTGMDIEE-PQLMKPRKAIFKGSEAIKNQVQQFLQDYYLIY-DSEERQGLLSIYHEQACFSLTI 413

  Fly   378 PV-----QLNYVYGYKLYNRNQKRQHSSFAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQV 437
            |.     .|:.:.||....|:.|.......|...|:..:..::..|..||.......:..:||..
  Rat   414 PFNPSGPDLSSMCGYFKDERDVKNPKEFHIQRQLLKYTKEDIVGYLRTLPKTLHVFNSFQVDICF 478

  Fly   438 FTSSLRIFTLTGYFKEISSDTLE-PRRFQRTFVLQTSNSPGWLITNDMLCITSTMPD-------- 493
            .......|:::|.|||:...:.| .|.|.|.|:....:|....|.||.|.:.:..||        
  Rat   479 QMEKTLCFSVSGLFKEVEGSSQECIRAFMRIFIAVFESSSNLCIVNDQLFVRNPSPDEIQGAFAI 543

  Fly   494 --PKKTIKFKPETNMINTDPSVEKINKPAVTVLDRKSKEDVQISRPLSGKELN-----------P 545
              |.....||                    .||.::.:..||.....||.:|.           .
  Rat   544 SSPTSCSSFK--------------------LVLSQEQQRMVQAFSTQSGMKLEWSQKCLDDNKWD 588

  Fly   546 LNKAVQKMSLSQV-DHLPSENFNDM 569
            ..:|.:..::.|. ..:|.|.|..|
  Rat   589 YTRAAEVFTMLQTKSKIPKEFFKQM 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_729938.2 leucine-rich repeat 191..231 CDD:275382 8/41 (20%)
LRR <229..>300 CDD:443914 22/76 (29%)
leucine-rich repeat 232..257 CDD:275382 7/24 (29%)
leucine-rich repeat 258..281 CDD:275382 7/22 (32%)
NTF2_like 338..489 CDD:471850 44/157 (28%)
Nxf7NP_001032293.1 Tap-RNA_bind 112..191 CDD:462696 19/94 (20%)
leucine-rich repeat 217..259 CDD:275382 8/41 (20%)
LRR <258..>345 CDD:443914 25/86 (29%)
leucine-rich repeat 260..285 CDD:275382 7/24 (29%)
leucine-rich repeat 286..309 CDD:275382 7/22 (32%)
leucine-rich repeat 310..340 CDD:275382 6/29 (21%)
NTF2_like 380..531 CDD:471850 43/151 (28%)
TAP_C 549..611 CDD:197882 13/81 (16%)

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