DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nxf3 and Nxf3

DIOPT Version :10

Sequence 1:NP_729938.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_008771632.1 Gene:Nxf3 / 302591 RGDID:1564923 Length:571 Species:Rattus norvegicus


Alignment Length:573 Identity:117/573 - (20%)
Similarity:218/573 - (38%) Gaps:113/573 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 DDLRKNLNEKSKIREYVQELIGNEQQMGSVLDTISSTEEDHRVATVTGWSTVNIANCAGVSNSSI 95
            |.:..|:.|.:|         ..|::|          |.|.:..|...|..|.|.  .|:.... 
  Rat    78 DQMNVNMEEGAK---------PPERKM----------ERDKQDDTSENWFKVTIP--FGIKYDK- 120

  Fly    96 FVALKWVM--------MPIKVEIFNFKRSGPEDNMARGQFLLDNLLSANRLKRLQEEVAVINTCQ 152
                ||::        :|.....|::::       .:..|.:|:...|..||.:.:::. ..|..
  Rat   121 ----KWMLNLIQSQCSIPFTPVQFHYEK-------MQATFFVDDPNIAFMLKAISDKIR-DETDN 173

  Fly   153 KIEVRVTP-GLPKSMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPELSLHFCPLHMVK 216
            ||.:.::| ..|.|:  .::..|.....:..:..:.:...|.|:..|.....:|:.:        
  Rat   174 KISIFISPCDEPHSV--TELKSEKMDQKKLTMNQQCDTSQRILNRQRLSFDQDLTTY-------- 228

  Fly   217 LLETVLVLS--NHLFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINK 279
              .|.||||  .::.|   ||.:|...:..     .||:.       .::..:..|:.|:..: |
  Rat   229 --PTDLVLSPRRYMTP---SLNISEEDVTQ-----ANSEG-------KMAKEQASDIEEICAV-K 275

  Fly   280 LSCKTIFLAGNGLAKLSVDVIRKMLPQLKNVHGCVQLGESTEAVDNIPKSQQLQGGGTNGLKFCQ 344
            .|..|.....:.    :::.|.::.|:|.::.|    .||.:.....|:.|:..  .|....|.:
  Rat   276 SSLSTTMPDKSS----NINSILELFPKLLSLDG----QESCKPALCGPEDQKTI--STYKRSFFE 330

  Fly   345 ---------DFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVP-----VQLNYVYGYKLYNRNQK 395
                     .|:..||..:|:.:....|..|:.| |.|||:||     :..:.|..|..|:|:.|
  Rat   331 SESIKTLVLQFLQQYYFIYDNGDREGLLNAYHAD-ACFSLTVPFSTMDLSASSVCEYVKYSRSMK 394

  Fly   396 RQHSSFAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLE 460
            .....:.:...|:..:..::..|..||....||.:..:||...|.....|:::|.|||:...:..
  Rat   395 VLKDPYMRKQLLKHKKCDIIHFLRALPKTQHDLTSFSVDICFQTEKTLCFSVSGLFKEVEGSSQG 459

  Fly   461 P-RRFQRTFVLQTSNSPGWLITNDMLCITSTMPDPKKTIKFKPETNMINTD-----PSVEKINKP 519
            . ..|.|.||....||.        |||.:.....:....|...:|.::|.     ||:.:..:.
  Rat   460 CFHAFTRIFVATWDNSD--------LCIINDKLSVRNVYGFPSASNAVDTCSSSRLPSLSQDQQQ 516

  Fly   520 AVTVLDRKSKEDVQISRPLSGKELNPLNKAVQKMSLSQV-DHLPSENFNDMPP 571
            .:.....:|..:|:.|:.....:....|||:|..:|.:| |.:|.:......|
  Rat   517 MMPTFCSQSGVNVERSQKCLHDDQWNYNKAIQSFALLKVKDTVPEDKTTHTSP 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_729938.2 leucine-rich repeat 191..231 CDD:275382 9/41 (22%)
LRR <229..>300 CDD:443914 11/70 (16%)
leucine-rich repeat 232..257 CDD:275382 5/24 (21%)
leucine-rich repeat 258..281 CDD:275382 3/22 (14%)
NTF2_like 338..489 CDD:471850 42/165 (25%)
Nxf3XP_008771632.1 Tap-RNA_bind 107..186 CDD:462696 14/86 (16%)
leucine-rich repeat 211..250 CDD:275382 5/38 (13%)
leucine-rich repeat 269..298 CDD:275382 8/30 (27%)
NTF2_like 333..488 CDD:471850 37/168 (22%)
TAP_C 503..563 CDD:197882 14/65 (22%)

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