DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nxf3 and LOC100490733

DIOPT Version :10

Sequence 1:NP_729938.2 Gene:Nxf3 / 317878 FlyBaseID:FBgn0263232 Length:615 Species:Drosophila melanogaster
Sequence 2:XP_004914856.2 Gene:LOC100490733 / 100490733 XenbaseID:XB-GENE-29080319 Length:658 Species:Xenopus tropicalis


Alignment Length:572 Identity:137/572 - (23%)
Similarity:238/572 - (41%) Gaps:101/572 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KSHEPDSRL-IQNFKKHVNSQSPLD--DLRKNLNEKSKIR-EYVQELIGNEQQMGSVLDTISSTE 68
            |...|..|| :...||....||...  .::.:::.:.::: .:::....::.|....||..:..|
 Frog    53 KQFYPSMRLEVAKKKKRFRKQSWFHRRSVQLSVDGRRRVKCNFIECDRDSQGQCPLSLDESNEIE 117

  Fly    69 EDHRVATVTGWSTVNIAN----CAGVSNSSIFVAL----------KWVMMPIKVEIFNFKRSGPE 119
            :.:.     |.|.:|.:|    .|...|:.::..:          .|::..|:.|...|.|:...
 Frog   118 DPYE-----GGSHLNPSNGQLYRAKNDNTQVWFKITIPYGKDYNKDWLLNAIREECGLFFRAEQF 177

  Fly   120 DNM-ARGQFLLDNLLSANRLKRLQEEVAVINTCQKIE--------VRVTPGLPK----------- 164
            ..: .:..|.:|...:|.         |::|..:||:        :.|||.:.:           
 Frog   178 HYVKKKAVFFVDKFATAK---------ALLNASRKIQADQYFKIVINVTPSMYRHHGNPTLCHRD 233

  Fly   165 SMMCAQITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPEL-SLHFC-PLHMVKLLETVLVLSNH 227
            :.|.:....:....||..|:.||:..:.:||||.....||| |.:.| .|:.....|.:|.|...
 Frog   234 AKMGSLCPGDSLYCIQACLQKRYDDRTASLDLSNLSIDPELQSTNKCLCLNQASDAELILQLIAE 298

  Fly   228 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFLAGNG- 291
            .||.:.||.||.|.|.||..|:|.|.....|:.:::|.|:|....|:|.::||..|.::|.||. 
 Frog   299 HFPQLLSLDLSYNNLSSLTDFSGLSALAPQLQSMNLSYNQICQAQEINVLHKLELKELWLEGNPF 363

  Fly   292 LAKLS-----VDVIRKMLP--QLKNVH----GCVQLGESTEAVDNIPKS-QQLQGG---GTNGLK 341
            ||.|.     ..::....|  |:.:.|    ||.        ...:|:| .|::|.   ..:...
 Frog   364 LASLESTSTYYRIVMNHFPSVQILDGHFFKPGCF--------FGKVPRSLPQIKGSFFVNEDLRA 420

  Fly   342 FCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVP------VQLNYVYGYKLYNRNQKRQHSS 400
            |...|:|.|:|.:|.| :|.:|...|.:....|.|:|      :.:.....|...|||..|...:
 Frog   421 FLVPFVSRYFTIYDST-QRQQLLPLYHENCCCSFSLPNVLLPHICVEQAKEYLKENRNLLRVKRA 484

  Fly   401 FAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLTGYFKEISSDTLEP---- 461
            ..:...::..|..::..|..||....||.:..||:...|.||..|::.|.|||.|     |    
 Frog   485 ALRQQLMKYNRLQVVGFLCNLPRTEHDLSSFTLDVWFQTPSLIGFSVAGIFKEES-----PKWKK 544

  Fly   462 --RRFQRTFVLQTSNSPGWLITNDMLCITSTMPDPKKTIKFKPETNMINTDP 511
              |.|:|:|::..:......|.||.|.|.::..|     :::.:....:.||
 Frog   545 LCRSFRRSFLIVPAMEACAQILNDQLVIINSYVD-----QYEDKCGPASPDP 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nxf3NP_729938.2 leucine-rich repeat 191..231 CDD:275382 14/41 (34%)
LRR <229..>300 CDD:443914 28/76 (37%)
leucine-rich repeat 232..257 CDD:275382 11/24 (46%)
leucine-rich repeat 258..281 CDD:275382 7/22 (32%)
NTF2_like 338..489 CDD:471850 45/162 (28%)
LOC100490733XP_004914856.2 Tap-RNA_bind 144..220 CDD:462696 15/84 (18%)
leucine-rich repeat 260..302 CDD:275382 14/41 (34%)
LRR <299..>363 CDD:443914 25/63 (40%)
leucine-rich repeat 303..328 CDD:275382 11/24 (46%)
leucine-rich repeat 329..352 CDD:275382 7/22 (32%)
leucine-rich repeat 353..383 CDD:275382 7/29 (24%)
NTF2_like 425..574 CDD:471850 44/154 (29%)
UBA_TAP-C 606..654 CDD:270527
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.