DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha16-3 and Atp5mc2

DIOPT Version :9

Sequence 1:NP_001189086.1 Gene:Vha16-3 / 317846 FlyBaseID:FBgn0028667 Length:158 Species:Drosophila melanogaster
Sequence 2:NP_598240.1 Gene:Atp5mc2 / 171082 RGDID:620051 Length:141 Species:Rattus norvegicus


Alignment Length:118 Identity:36/118 - (30%)
Similarity:52/118 - (44%) Gaps:25/118 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GIAAMAVMRPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYIHLAAG-LSVGFAG 106
            |::.:||.||   :.|:||.......||               |..|......:.|| .:||.||
  Rat    40 GLSCLAVRRP---LTSLIPSRSFQTSAI---------------SRDIDTAAKFIGAGAATVGVAG 86

  Fly   107 LAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIVAIYL 155
            ..||  ||.|..:.:.|.|:.|    :||...||....:|.:||:.|:||..:
  Rat    87 SGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha16-3NP_001189086.1 V_ATP_synt_C 16..121 CDD:130170 23/78 (29%)
ATP-synt_Vo_c_ATP6C_rpt2 91..156 CDD:349416 24/70 (34%)
Atp5mc2NP_598240.1 ATP9 67..141 CDD:164765 25/73 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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