DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zyx and lpp

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_957492.1 Gene:lpp / 573024 ZFINID:ZDB-GENE-040426-918 Length:556 Species:Danio rerio


Alignment Length:644 Identity:212/644 - (32%)
Similarity:283/644 - (43%) Gaps:176/644 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ELSLPKGDTGSPLVCIGHGKVAKLVAKI--------SNNQNASVKRRLDIPPKPP--IKYNEMPQ 64
            |.|||.|.|.   :.|...:..|..|.:        ...|........|.||.||  :..:.:|.
Zfish    19 ETSLPMGTTS---ISISQQQAPKKFAPVVAPKPKFNPYKQPGDATHEGDYPPPPPPVVDPSGLPS 80

  Fly    65 VPSSRQVLCSREPLYSQP-----------LIGVEKTMRGHMPFRKYLSSEFGVADTQINRKTTLD 118
             |||          :..|           :.|.|||:...   |..|.:|             :|
Zfish    81 -PSS----------FPPPPPMDETSLGFQIKGPEKTLEER---RSSLDAE-------------ID 118

  Fly   119 NPAILEQQLEALAYHKLQMEKKGLLGVQAKPTQPLNSFTKPLSKTLSKSLIYSNLGSVRKEIETL 183
            :...:...||:.:.:|.:.::..........|.|:..:.                   |..|.|.
Zfish   119 SLTSILADLESSSPYKPRTQQNSASPAATGSTAPVTGYR-------------------RMVIPTQ 164

  Fly   184 ELLTDETKISASTYSNVNETAMDSSHSSTQKMLSVCTNFISDNEKDELPPPPSPESAVSSSYSEL 248
            ..||...|.:....:..|.|...||                 :.:.:..|.|.|   |.:||:..
Zfish   165 PPLTATKKSTPKPQAPQNVTPPASS-----------------SPRPQYQPAPQP---VPASYTTA 209

  Fly   249 RHATLEFNKPIDYLQNNQTTNPLQIYANQYA-MQHDATGKSSSTY--------DSIYEPINPRPC 304
                   :.|      :|.|..:|:.|.|.| .|....|.....|        :..|.|..|..|
Zfish   210 -------STP------SQPTFNVQVRAAQPAPQQQPVRGPGQVQYMPAQPRAPEFAYGPPQPGFC 261

  Fly   305 VADTLPRESYNLHNSYVNDNNPNISHEYNISNSIEANQTLYIHGNARTTFYDVNSIHRNDKEGL- 368
            .|   |...|       .|.:...:..|...|:..|..:   |..|.|           ..:|. 
Zfish   262 PA---PSGGY-------QDQHYGGAPGYGGQNTWRAEPS---HHPAPT-----------PSQGYQ 302

  Fly   369 -----KNYISIPT----------------EPVQEL-----------------ENYGRCVKCNSRV 395
                 |.||:.|.                .|.:||                 |.:|||..|...|
Zfish   303 PAPPKKTYITDPPASLAPFAGGSSAPHKGRPEEELDRLTKKMLYDMDNPPSEEYFGRCSSCGENV 367

  Fly   396 LGESSGCTAMDQIYHIFCFTCTDCQINLQGKPFYALDGKPYCEYDYLQTLEKCSVCMEPILERIL 460
            :||.:|||||||::|:.||.|..|...|:||||||::.|.|||..|:.|||.|::|.:||:||||
Zfish   368 VGEGTGCTAMDQVFHVDCFICMTCGSKLRGKPFYAVEKKAYCEPCYINTLETCNICYKPIMERIL 432

  Fly   461 RATGKPYHPQCFTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFAPRCCVCKQPIMPDPGQEETI 525
            |||||.|||||||||||.:||||:.|||||:|..:||.||||||||||.||.:||||.||||||:
Zfish   433 RATGKAYHPQCFTCVVCHRSLDGIPFTVDASNHIHCIEDFHKKFAPRCSVCNEPIMPAPGQEETV 497

  Fly   526 RVVALDRSFHLECYKCEDCGLLLSSEAEGRGCYPLDDHVLCKSCNAKRVQALTNRMTSE 584
            |:|||||.||::||:|||||.|| ||.:.:||||||.|||||:||..|:||||.:.|::
Zfish   498 RIVALDRDFHVQCYRCEDCGCLL-SEGDNQGCYPLDGHVLCKNCNTSRIQALTAKATTD 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737 28/52 (54%)
LIM2_LPP 448..507 CDD:188740 43/58 (74%)
LIM3_LPP 508..575 CDD:188821 46/66 (70%)
lppNP_957492.1 DUF2413 123..>201 CDD:287302 17/113 (15%)
LIM1_TRIP6 360..413 CDD:188736 28/52 (54%)
LIM 420..479 CDD:295319 43/58 (74%)
LIM3_TRIP6 480..545 CDD:188820 45/65 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 100 1.000 Domainoid score I6993
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001663
OrthoInspector 1 1.000 - - otm25637
orthoMCL 1 0.900 - - OOG6_108119
Panther 1 1.100 - - LDO PTHR24207
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3402
SonicParanoid 1 1.000 - - X2600
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.800

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