DRSC/TRiP Functional Genomics Resources

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Protein Alignment Zyx and lims1

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_021335295.1 Gene:lims1 / 554019 ZFINID:ZDB-GENE-050522-236 Length:345 Species:Danio rerio


Alignment Length:216 Identity:55/216 - (25%)
Similarity:91/216 - (42%) Gaps:27/216 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   388 CVKCNSRVLGESSGCTAMDQIYHIFCFTCTDCQINLQGKPFYALDGKPYCEYDYLQTLEK-CSVC 451
            |.:|.|..........:..::||..||.|..|........||..:|:.|||:|:...... |..|
Zfish    21 CERCKSGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQC 85

  Fly   452 MEPILERILRATGKPYHPQCFTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFAPR------CCV 510
            .|.|:.|:::|....:||.||.|.:|...|..:.|..:| .::.| ...|.:...|      |..
Zfish    86 GEFIIGRVIKAMNNSWHPDCFCCDICQAVLADVGFVKNA-GRHLC-RPCHNREKARGLGKYICQK 148

  Fly   511 CKQPIMPDPGQEETIRVVALDRSFHLECYKCEDCGLLLSSEA-EGRG---CYPLDDHV---LCKS 568
            |...|...|       ::..:..:|.:.:.|.:||..|:::| |.:|   |.|..|.:   :|.:
Zfish   149 CHAIIEEQP-------LIFKNDPYHPDHFNCSNCGKELTADARELKGELYCLPCHDKMGVPICGA 206

  Fly   569 C----NAKRVQALTNRMTSEH 585
            |    ..:.|.|:..:...||
Zfish   207 CRRPIEGRVVNAMGKQWHVEH 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737 15/52 (29%)
LIM2_LPP 448..507 CDD:188740 17/58 (29%)
LIM3_LPP 508..575 CDD:188821 17/77 (22%)
lims1XP_021335295.1 LIM1_PINCH 21..79 CDD:188717 16/57 (28%)
LIM2_PINCH 82..133 CDD:188718 16/52 (31%)
LIM3_PINCH 146..196 CDD:188719 14/56 (25%)
LIM4_PINCH 202..255 CDD:188720 6/26 (23%)
LIM5_PINCH 263..316 CDD:188721
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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