DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zyx and Prickle4

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001277266.1 Gene:Prickle4 / 381104 MGIID:2685785 Length:369 Species:Mus musculus


Alignment Length:136 Identity:37/136 - (27%)
Similarity:54/136 - (39%) Gaps:14/136 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 TLEKCSVCMEPILERILRA-TGKP--YHPQCFTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFA 505
            |.:||...::|....:..| .|:.  :|..||.|..||:.|..|::... ....||.....:...
Mouse   123 TCKKCKKLLDPGEYGVFAARAGEQSCWHRPCFACQACGQGLINLIYFYH-EGHLYCGRHHAELLR 186

  Fly   506 PRCCVCKQPIMPDPGQEETIRVVALDRSFHLECYKCEDCGLLLSSEAEGRGCYPLDDHVLCKSCN 570
            |||..|.|.|......|      |..:.:|...:.|:||...|..   ||...| .....|.||.
Mouse   187 PRCPACDQLIFSQRCTE------AEGQRWHENHFCCQDCAGPLDG---GRYALP-GGSPCCPSCF 241

  Fly   571 AKRVQA 576
            :||.::
Mouse   242 SKRYRS 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737
LIM2_LPP 448..507 CDD:188740 14/61 (23%)
LIM3_LPP 508..575 CDD:188821 19/66 (29%)
Prickle4NP_001277266.1 PET_OEBT 1..116 CDD:193603
LIM1_Testin_like 124..181 CDD:188726 15/57 (26%)
LIM2_Testin_like 187..241 CDD:188727 18/63 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.