DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zyx and scel

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_005168027.1 Gene:scel / 368684 ZFINID:ZDB-GENE-030616-15 Length:612 Species:Danio rerio


Alignment Length:557 Identity:111/557 - (19%)
Similarity:191/557 - (34%) Gaps:178/557 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SLPKGDTGSPLVCIGHG-------------KVAKLVAKIS--NNQNAS-----------VKRRLD 50
            |||:..|.|....:.:|             .|.|...|:.  |::|.:           ..|:.|
Zfish   122 SLPRTSTTSTTTTVKNGTKTTETTVTTTKQDVVKSSTKLETVNDRNPADSSTRRTGDYKTTRQED 186

  Fly    51 IP----------PKPPIKYNEMPQVPSSRQVLCSREPLYSQPLIGVEKTMRGHMPFRKYLSS--- 102
            |.          |..|:|.....:..:...||.::...||   :...|:.....|....:::   
Zfish   187 ITVKSSKDTVDGPSSPVKTTTSIKSYTKEDVLPAKTTPYS---VQSTKSSENLTPTSSIMTTNTK 248

  Fly   103 -EFGVADTQI----NRKTTLDNPAILEQQLEALAYHKLQMEKKGLLGVQAK-PTQP------LNS 155
             |...:.|::    :.||.:|.||...:...::..:    .|:.:.....| ||.|      :.:
Zfish   249 PEISDSKTEVVTVKSSKTIIDTPASPVKTTTSIKTY----TKEDVTSTNTKRPTSPVKTTTSIKT 309

  Fly   156 FTK----PLSKTLSKSLIYSNLGSVRKEIETLELLTD---------ETKISASTYSNVNET---- 203
            |||    |...|.:.:  |:.....:.|:.|::...|         :|..|..||:..:.|    
Zfish   310 FTKEDVSPAKSTTTTT--YTTKSDYKTEVATVKSSKDIIDIPASPVKTTTSIKTYTKEDVTSPKT 372

  Fly   204 ---AMDSSHSSTQKMLSVCT-NFISD---------NEKDELPPPPSPESAVSSSYSELRHATLEF 255
               ::.|:.||...:....| ..|||         :.||.:..|.||.. .::||| ::..|.|.
Zfish   373 TPYSVRSTKSSKDFLYDTPTKTSISDYKTEVVTVNSSKDIVDIPTSPVK-TTTSYS-IKSYTKED 435

  Fly   256 NKPIDYLQNNQTTNPLQIYANQYAMQHDATGKSSSTYDSIYEPINPRPCVADTLPRESYNLHNSY 320
            ..|      .:||:             |:...:.|:.|.:|:.:.|       |..:|.|     
Zfish   436 VSP------TKTTS-------------DSIRSTKSSEDLLYDTLIP-------LSIKSTN----- 469

  Fly   321 VNDNNPNISHEYNISNSIEANQTLYIHGNARTTFYDVNSIHRNDKEGLKNYISIPTEPVQELENY 385
               :.|:.|.|     .:.:::|:      ||.:   ::|.||:       .|....|     :|
Zfish   470 ---SKPDSSRE-----DLSSSKTV------RTVY---STIDRNE-------WSTDLSP-----SY 505

  Fly   386 GRCVKCNSR---VLGESSGCTAMDQIYHIFCFTCTDCQINLQGKPFYALDGKPYCEYDYLQTLEK 447
            .|.....||   .:.:|........:|               ..|...::.|..|.|        
Zfish   506 TRTSYTESRPFEYMSDSLTSKTTTTVY---------------SSPERKVNAKDICTY-------- 547

  Fly   448 CSVCMEPILERILRATGKPYHPQCFTCVVCGKSLDGL 484
            |:..|....:.||.......|.:||.|.||..||..|
Zfish   548 CNQSMYTDEKFILDDMNINCHARCFKCGVCNTSLGNL 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737 8/55 (15%)
LIM2_LPP 448..507 CDD:188740 13/37 (35%)
LIM3_LPP 508..575 CDD:188821
scelXP_005168027.1 LIM 544..>583 CDD:214528 14/46 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.