DRSC/TRiP Functional Genomics Resources

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Protein Alignment Zyx and Fblim1

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_008762495.1 Gene:Fblim1 / 362650 RGDID:1359551 Length:552 Species:Rattus norvegicus


Alignment Length:489 Identity:137/489 - (28%)
Similarity:189/489 - (38%) Gaps:136/489 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 LQMEKKGL-------LGVQAKPTQPLNSFTKPLSKTLSKSLIYSNLGSVRKEI------------ 180
            ||:...||       :|:.....|.|...:|...:..|.  ::..|...|:::            
  Rat   150 LQLSGAGLNFGPCLPVGISISAPQELIMASKQEKRVASS--VFITLAPPRRDVAVTEEVTQAVCE 212

  Fly   181 -------ETLELLTDETKI--SASTYSNVNETAMDSSHSSTQKMLSVCT---NFISDNEKDELPP 233
                   |||...|....:  |..|::....|.........|.....|:   ..:::.:.|.|||
  Rat   213 ARRARPWETLPTKTPGAAVGRSPKTWTPSGRTTASLPEVPPQLSNGGCSLPPPPLNEEDLDLLPP 277

  Fly   234 PPSPESAV-------------SSSYSELRHATLEFNKPIDYLQNNQTTNPLQIYANQYAMQHDAT 285
            ||.|.||.             ||..|:|....|....|...||                    |.
  Rat   278 PPPPPSAYLPLPEEEPPVVPGSSLISDLEQLHLPPPPPPPLLQ--------------------AP 322

  Fly   286 GKSSSTYDSIYEPINPRPCVADTLPRESYNLHNSYVNDNNPNISHEYNISNSIEANQTLYIHGNA 350
            .|.||...   :|:..||...:..|.                                       
  Rat   323 SKGSSVQP---QPVQVRPSEEELPPP--------------------------------------- 345

  Fly   351 RTTFYDVNSIHRNDKEGLKNYISIPTEPVQELENYGR---CVKCNSRVLGESSGCTAMDQIYHIF 412
                                    |.|||...|....   |..|:..|........||.:.||..
  Rat   346 ------------------------PEEPVTLPEREASTDVCGFCHKPVSPRELAVEAMKRQYHAQ 386

  Fly   413 CFTCTDCQINLQGKPFYALDGKPYCEYDYLQTLEKCSVCMEPILERILRATGKPYHPQCFTCVVC 477
            ||||..|:..|.|:.||..||:|.||..|..|||||..|.|.:.|.::||.||.:||.|||||.|
  Rat   387 CFTCRTCRRQLAGQRFYQKDGRPLCEPCYQDTLEKCGKCGEVVQEHVIRALGKAFHPPCFTCVTC 451

  Fly   478 GKSLDGLLFTVDATNQNYCITDFHKKFAPRCCVCKQPIMPDPGQEETIRVVALDRSFHLECYKCE 542
            .:.:....|.:|..||.||:|||::||||.|.:|:.||:|..| ::..::..:.|:||..||:||
  Rat   452 ARCISDESFALDNQNQVYCVTDFYRKFAPVCSICENPIIPRDG-KDAFKIECMGRNFHENCYRCE 515

  Fly   543 DCGLLLSSEAEGRGCYPLDDHVLCKSCNAKRVQA 576
            ||.:|||.|...:|||||:||:.||.|:.||..|
  Rat   516 DCSVLLSVEPTDQGCYPLNDHLFCKPCHMKRSAA 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737 21/52 (40%)
LIM2_LPP 448..507 CDD:188740 28/58 (48%)
LIM3_LPP 508..575 CDD:188821 31/66 (47%)
Fblim1XP_008762495.1 LIM <357..415 CDD:295319 21/57 (37%)
LIM2_FBLP-1 422..474 CDD:188758 23/51 (45%)
LIM3_Zyxin_like 482..543 CDD:188743 28/61 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24207
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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