DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Zyx and Zyx

DIOPT Version :9

Sequence 1:NP_652015.1 Gene:Zyx / 317824 FlyBaseID:FBgn0011642 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_006236450.1 Gene:Zyx / 114636 RGDID:620698 Length:666 Species:Rattus norvegicus


Alignment Length:635 Identity:182/635 - (28%)
Similarity:253/635 - (39%) Gaps:188/635 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GDTGSPLVCIGHGKVAKLVAKISNNQNASVKRRLDIPPKPPIKYNEMPQVPSSRQVLCSREPLYS 80
            ||:.||:.              :..|.|.:.|..:|||.||..:                 ||..
  Rat   144 GDSESPVA--------------AGAQRAQMGRVGEIPPPPPEDF-----------------PLPP 177

  Fly    81 QPLIGVEKTMRGHM------PFRKYLSSEFGVADTQINRKTTLDNPAILEQQLEALAYHKLQMEK 139
            .|:||......|.:      |....:...|              .||.||:.             
  Rat   178 PPVIGEGDDSEGALGGAFPPPPPPLIEEPF--------------PPAPLEED------------- 215

  Fly   140 KGLLGVQAKPTQPLNSFTKPLSKTLSKSLIYSNLGSVRKEIETL-ELLTDETKISASTYSNVNET 203
                 :...|..||.....|.:.|.........:.|:..||::| .||.|.||          ..
  Rat   216 -----IFPSPPPPLEEEGGPEAPTQLPPQPREKVSSIDLEIDSLSSLLDDMTK----------ND 265

  Fly   204 AMDSSHSSTQKMLSVCTNFISDNEKDELP----------------PPPSPESAVSSSYSELRHAT 252
            ...:..||......|.|.|:........|                |||.|::             
  Rat   266 PFKARVSSGYVPPPVATPFVPKPSTKPAPVGTAPLPPWKAPSSSQPPPQPQA------------- 317

  Fly   253 LEFNKPIDYLQNNQTTNPLQIYANQYAMQHDATGKSSSTYDSIYEPIN----PRPCVADTLPR-- 311
                ||           .:|::|...|..|......||.......|::    |.|..|...|:  
  Rat   318 ----KP-----------QVQLHAQPQAKPHVQPQSVSSANTQPRGPLSQAPTPAPKFAPVAPKFT 367

  Fly   312 --------------------ESYNLH-NSYVNDNNPNISHEYNISNSIE---------------- 339
                                :|..|. .|.|...:|. ...:..:...|                
  Rat   368 PVASKFSPGAPSGPGPQPSQKSVPLEAPSSVGTGSPQ-PPSFTYAQQKEKPLVQEKQHPLPPPAQ 431

  Fly   340 -ANQTLYIHGNARTTFYDVNSIHRNDKEGLKNYISIPTEPVQELENYGR--------CVKCNSRV 395
             .||.....|....|..:|..:.:           :..:.:|::|:..|        |.||:..:
  Rat   432 NQNQVRSPGGPGPLTLKEVEELEQ-----------LTQQLMQDMEHPQRQSVAVNESCGKCSQPL 485

  Fly   396 LGESSGCTAMDQIYHIFCFTCTDCQINLQGKPFYALDGKPYCEYDYLQTLEKCSVCMEPILERIL 460
            ........|:.|::||.||||..||..|||:.||:|:|.||||..|..|||||:.|.:||.:|:|
  Rat   486 ARAQPAVRALGQLFHITCFTCHQCQQQLQGQQFYSLEGAPYCEGCYTDTLEKCNTCGQPITDRML 550

  Fly   461 RATGKPYHPQCFTCVVCGKSLDGLLFTVDATNQNYCITDFHKKFAPRCCVCKQPIMPDPGQEETI 525
            |||||.|||.|||||||...|:|..|.||..||.:|:.|:||::||||.||.:||||:||::||:
  Rat   551 RATGKAYHPHCFTCVVCACPLEGTSFIVDQANQPHCVPDYHKQYAPRCSVCSEPIMPEPGRDETV 615

  Fly   526 RVVALDRSFHLECYKCEDCGLLLSSEAEGRGCYPLDDHVLCKSCNAKRVQ 575
            ||||||::||::||||||||..||.||:..||:|||.||||:.|::.|.|
  Rat   616 RVVALDKNFHMKCYKCEDCGKALSIEADDNGCFPLDGHVLCRKCHSARAQ 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ZyxNP_652015.1 LIM1_LPP 388..441 CDD:188737 24/52 (46%)
LIM2_LPP 448..507 CDD:188740 33/58 (57%)
LIM3_LPP 508..575 CDD:188821 42/66 (64%)
ZyxXP_006236450.1 LIM1_Zyxin 445..531 CDD:188735 15/111 (14%)
LIM2_Zyxin 538..597 CDD:188739 36/58 (62%)
LIM3_Zyxin 598..664 CDD:188819 39/65 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001663
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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