Protein Alignment CG18789 and NUP42

DIOPT Version :10

• Sequence 1: NP_723704.1
• Gene: CG18789 / 317813
• FlyBaseID: FBgn0042127
• Length: 398
• Species: Drosophila melanogaster
• Sequence 2: NP_010478.3
• Gene: NUP42 / 851774
• SGDID: S000002600
• Length: 430
• Species: Saccharomyces cerevisiae
• Alignment Length: 300
• Identity: 67/300 - (22%)
• Similarity: 109/300 - (36%)
• Gaps: 73/300 - (24%)

  Fly   123 GTVSAAPQQSSNPFAAA---APAAANTSASIFGKPTLSAG----NIFGNA--TSQASNTN-SIFG 177
            |..|..|..:::||.:.   |...|::::|.|||||..|.    :.||..  ||.:|.|. |.||
Yeast   171 GAASNTPLTTTSPFGSLQQNASQNASSTSSAFGKPTFGAATNTQSPFGTIQNTSTSSGTGVSPFG 235

  Fly   178 GTISNANARNSIFGVGAAATGAQSVFGQPQQQQLQPAAQAFQGGNIFAQAQVQVQAQPVNPNPFG 242
            ...:|:|.::....:.:.|....|.||       ...::|....|:.:.|.....    |.:||.
Yeast   236 TFGTNSNNKSPFSNLQSGAGAGSSPFG-------TTTSKANNNNNVGSSAFGTTN----NQSPFS 289

  Fly   243 GFQQQQQQPQSTGIFGQAASQNMGGMFTQASQQLQQQQQAAASGLFAQAAASAFPNQQQMQQQQQ 307
            |        .|.|.||.|::.|..   |..:.|.....:..:.|:..|..|:
Yeast   290 G--------GSGGTFGSASNLNKN---TNGNFQSSFGNKGFSFGITPQNDAN------------- 330

  Fly   308 MQQQQQMQQQQMHQQQQMQQQQMQQQQQQFQMQQ----------QQQMMQQQQQQAQPTNEI--- 359
                      ::.|......|.|........::.          ||||..........|.:|
Yeast   331 ----------KVSQSNPSFGQTMPNTDPNISLKSNGNATSFGFGQQQMNATNVNANTATGKIRFV 385

  Fly   360 -----QSSVYSRMEDLNEQEIEAFKADQFLPGALPFKPPP 394
                 :......:.||.|:.::.|:|::|..|.:|..|||
Yeast   386 QGLSSEKDGILELADLAEETLKIFRANKFELGLVPDIPPP 425

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG18789	NP_723704.1	zf_CCCH_4	4..22	CDD:465719
		Nucleoporin_FG	149..>204	CDD:463941	20/61 (33%)
NUP42	NP_010478.3	FhaB	<2..>380	CDD:442443	54/253 (21%)