DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18789 and nup42

DIOPT Version :9

Sequence 1:NP_723704.1 Gene:CG18789 / 317813 FlyBaseID:FBgn0042127 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_001015793.1 Gene:nup42 / 548510 XenbaseID:XB-GENE-6258607 Length:449 Species:Xenopus tropicalis


Alignment Length:540 Identity:109/540 - (20%)
Similarity:156/540 - (28%) Gaps:244/540 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVVCRFFQQGSCRYGAKCNNEH------------------------------------------- 22
            |.:|.||.||.||||.||.|||                                           
 Frog     1 MAICSFFLQGRCRYGEKCWNEHPRGGSSRYQSQNRYQEPPGNAKGTWGSSSQRYVQPSSFSRSTT 65

  Fly    23 ----------------FDVKQY-------------------------------------LKADME 34
                            ||.:..                                     :..|||
 Frog    66 WVNRDNEKPSSGSHSGFDNRNVKFTAATGFPSSQNRFAALSSQDNSRDAQTDKGNIIDDITNDME 130

  Fly    35 SSLNGKMWPLSAYGPFKDKANFPNFIQDQSFEEVRFMCYEAKRQ-------NQFEQFSQQFNREV 92
            ...:...|..|.|...::|.|...| .|.|.||:|...|..:.:       |..:|...::.:.:
 Frog   131 IWESSGQWMFSVYSMLREKKNISGF-ADFSPEELRLEYYACQAEGNPLKYINAVQQLGSKWKQRI 194

  Fly    93 LEANN-----KMKTMLQMSPQVLEMMIKIH--ETPEGGTVSAAPQQSSNPFAA-------AAPAA 143
            ||..|     ||....::|....:|....:  :.|..|: |:.|..::.|.||       ||.||
 Frog   195 LELKNLNPSSKMALFNELSSPSSDMTSGYNGQQKPAFGS-SSFPTNNTAPTAATFSFKADAANAA 258

  Fly   144 --------ANTSASIFG-KPTLSAGNIFGNATSQAS-----NTNSIFGGTISNA---NARNSIFG 191
                    |.::...|| |||.:.....|.|.:.||     :::|.||.|.|.:   ||.|:...
 Frog   259 KAGATNSLAGSNVPAFGNKPTSAPSFGSGGAATAASFSFAPSSSSNFGATTSTSGFGNASNTASF 323

  Fly   192 VGAAATGAQSVFGQPQQQQLQPAAQAFQGG------------NIFAQAQVQVQAQPVNPNPFGGF 244
            .|.|.:.|...||....   ..||..|.||            ::|:       |..|.|.|.   
 Frog   324 QGTANSAAAPAFGVASS---STAATGFGGGFSTTGAMNTGVRDLFS-------AGTVGPGPV--- 375

  Fly   245 QQQQQQPQSTGIFGQAASQNMGGMFTQASQQLQQQQQAAASGLFAQAAASAFPNQQQMQQQQQMQ 309
                     |.:|    .|..|.:...||......|....|.|                      
 Frog   376 ---------TSLF----VQTTGPLHATASSTSLDGQSFRPSAL---------------------- 405

  Fly   310 QQQQMQQQQMHQQQQMQQQQMQQQQQQFQMQQQQQMMQQQQQQAQPTNEIQSSVYSRMEDLNEQE 374
                                                        ..||    |:::...:|:.:|
 Frog   406 --------------------------------------------NTTN----SLFTPQNELSAEE 422

  Fly   375 IEAFKADQFLPGALPFKPPP 394
            :..|||.:|..|.:|.||||
 Frog   423 LAQFKAQRFTLGKIPLKPPP 442

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG18789NP_723704.1 ZnF_C3H1 1..22 CDD:214632 13/20 (65%)
Nucleoporin_FG 145..>204 CDD:290362 20/67 (30%)
nup42NP_001015793.1 zf_CCCH_4 4..22 CDD:375772 12/17 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..84 2/61 (3%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..237 4/19 (21%)