DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18789 and amo1

DIOPT Version :9

Sequence 1:NP_723704.1 Gene:CG18789 / 317813 FlyBaseID:FBgn0042127 Length:398 Species:Drosophila melanogaster
Sequence 2:NP_596250.1 Gene:amo1 / 2539911 PomBaseID:SPBC15D4.10c Length:475 Species:Schizosaccharomyces pombe


Alignment Length:519 Identity:120/519 - (23%)
Similarity:183/519 - (35%) Gaps:165/519 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVVCRFFQQGSCRYGAKCNNEH---------FD---------------VKQYLK-ADMESSL--- 37
            ||||::|.|..||||..|.|:|         |.               |::.|| :|:::.|   
pombe     1 MVVCKYFLQNRCRYGTNCKNQHTVPSNGQNAFSKVNVFRPENGRPPIWVQRRLKRSDLDNLLPNR 65

  Fly    38 ----------NGK-MWPLSAYGPFKDKANFPNFIQ-DQSFEEVRFMCYEAKRQNQFEQFSQQFNR 90
                      |.| .||.:.|...:   |.|:..: |.|.||:|:..|:||..|..:.:.|: .:
pombe    66 RMKDINDDLKNAKPQWPFTGYSVVE---NLPSIYEGDVSPEELRWWAYQAKATNNMQAYEQR-QK 126

  Fly    91 EVLEANNKMKTMLQMSPQVL--EMMIKIHETPEGGT--VSAAPQQSSNPFAAAAPAAANTSASIF 151
            ::::........::.||...  ||..|:    .|.|  .|...:.:||         :..:::.|
pombe   127 QLMDDVEAKAAAVKRSPAAAFDEMRNKL----VGKTNYKSIFDKSTSN---------STVTSNQF 178

  Fly   152 GKPTL-SAGNIFGNATSQASNTNSIFGGTISNANARNSIFGVGAAATGAQSVFGQPQQQQLQPAA 215
            .|||. |..|.|.|      |.||     .:|....|.|||....:.....:...|..|  ..::
pombe   179 NKPTQNSPFNSFSN------NNNS-----FNNNQQANDIFGAPTTSAFTSQLNASPFSQ--NTSS 230

  Fly   216 QAFQGGNIFAQAQVQVQAQPVN------------PNPFGGFQQQQQQPQSTGI-FGQAASQNMGG 267
            .:|.|.|       .||..|.:            |:.|||.    .||.|:.: .||....:...
pombe   231 NSFTGSN-------PVQNNPSSFGSSSFGSATSGPSAFGGI----SQPNSSFVNSGQGIPNSSFS 284

  Fly   268 MFTQASQQLQQQQQA-AASGLFAQAAASAFPNQQQMQQQ--QQMQQQQQMQQQQMHQQQQMQQQQ 329
            .|:|.:....|.|.. ..|.:|....||.|..|.|.||.  |.:..|..:..   :.|.......
pombe   285 SFSQVASGFSQSQNVNDPSSIFGPTVASGFGIQNQPQQSAFQNLNTQFSLPN---NSQPVFGHTS 346

  Fly   330 MQQ--QQQQFQMQQQQQMMQQQQQQAQP------------TNEIQSSVYS--------------- 365
            :.|  ....|.:|.....|||.|....|            |::|.:|.:|               
pombe   347 LTQPVNPNGFTVQPPATFMQQPQGPFVPPNTTFESPFANVTSKISASGFSNDNPANKNIIQTPMF 411

  Fly   366 -------------------------RMEDLNE------QEIEAFKADQFLPGALPFKPPPRNFC 398
                                     .|.:.|:      :.|:.|:|..|:||.:|...||..||
pombe   412 GSSNTIDGPINPIGASSIQTLDDQVEMSNSNQNLAFPPEMIQQFEAQDFIPGKVPTTAPPPQFC 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18789NP_723704.1 ZnF_C3H1 1..22 CDD:214632 12/20 (60%)
Nucleoporin_FG 145..>204 CDD:290362 16/59 (27%)
amo1NP_596250.1 ZnF_C3H1 1..22 CDD:214632 12/20 (60%)
YTH1 139..453 CDD:227416 73/353 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 67 1.000 Inparanoid score I1952
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm47178
orthoMCL 1 0.900 - - OOG6_110455
Panther 1 1.100 - - LDO PTHR46527
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4413
TreeFam 00.000 Not matched by this tool.
65.960

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