DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment org-1 and tbr1

DIOPT Version :9

Sequence 1:NP_001285019.1 Gene:org-1 / 31778 FlyBaseID:FBgn0021767 Length:699 Species:Drosophila melanogaster
Sequence 2:NP_001072587.1 Gene:tbr1 / 780042 XenbaseID:XB-GENE-942241 Length:677 Species:Xenopus tropicalis


Alignment Length:622 Identity:174/622 - (27%)
Similarity:238/622 - (38%) Gaps:137/622 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 SPMK---------QIEACIQTAGKD------RSSYKPLEQIDAKLADIETHSTGSTGTANSNSST 97
            ||:|         |.||...:..||      ||...|:  :|. :::|.....||..        
 Frog    50 SPLKKATVRGMTNQSEADSFSGAKDAPGDGQRSKLSPV--LDG-VSEIRHSFDGSAA-------- 103

  Fly    98 SSISNPSCPDQ----SSSSSSSSVSLPT----DYAGVHSEASMAPTAGGTAVTTTSAGGVSASTA 154
                     |:    .||.|.|:.|.||    .|...|..|..|.:.|       |.|       
 Frog   104 ---------DRYLLPQSSQSQSAASAPTTTMFPYPSQHGAAHPAFSLG-------SPG------- 145

  Fly   155 SKKFKGQHKKDNNSAEN---GTVKPNSHNISKG-----------ESEPVH------PSL--AQAI 197
              ::...|....|.|.|   |...|..:. |.|           ::.|.:      |.|  .:|.
 Frog   146 --RYMAHHPVIANGAYNSLLGNSAPQGYP-SAGYPYSQQYGHSYQAAPFYQFSATQPGLVPGKAQ 207

  Fly   198 VVLETKALWDQFHAQGTEMIITKTGRRMFPTFQVRIGGLDPHATYICMMDFVPMDDKRYRYAFHN 262
            |.|..:.||.:||...|||||||.||||||.....|.||||.|.|...:|.:..|...:|  |..
 Frog   208 VYLCNRPLWLKFHRHQTEMIITKQGRRMFPFLSFNISGLDPTAHYNIFVDVILADPNHWR--FQG 270

  Fly   263 SCWVVAGKADP-ISPPRIHVHPDSPAVGSNWMKQIVSFDKLKLTNNQ--LDENGH-IILNSMHRY 323
            ..||..||||. :...|:::|||||..|::||:|.:||.|:|||||:  .:.||. ::|.|:|:|
 Frog   271 GKWVPCGKADTNVQGNRVYMHPDSPNTGAHWMRQEISFGKMKLTNNKGASNNNGQMVVLQSLHKY 335

  Fly   324 QPRFHLVYLPPKNASLDENEHSSHFRTFIFPETSFTAVTAYQNQRVTQLKISSNPFAKGFRDDGT 388
            |||.|:|.:  .....::.......:||.||||.|.|||||||..:|||||..|||||||||: .
 Frog   336 QPRLHVVEV--NEDGTEDTSQPGRVQTFTFPETQFIAVTAYQNTDITQLKIDHNPFAKGFRDN-Y 397

  Fly   389 NDVTTGGGSSMSSMSHESQARMKQQQQQQQQQQQQLQQQQQQQQQLKERTAATSNFGLSCSELAI 453
            :.:.||......:.|.....|.:.....:........|.|......|.|                
 Frog   398 DTIYTGCDLDRLTPSPNDSPRSQIVPGARYSMASTFLQDQFVSNYAKSR---------------- 446

  Fly   454 EQQQQQQQQQGVLQLPATPSSSSTSGNSPDLLGYQMEQQLQQQHQQQQQQQHQSQQQHLHQQHQA 518
                        ...|.......|..:.|...|....||.:.......|:...:...:......|
 Frog   447 ------------FHPPGAVPGPGTDRSVPHTNGLLSPQQGEDPGAPSPQRWFVTPANNRLDFTSA 499

  Fly   519 NQQQSLLQQSQNHTQYGSYHHAYQAQVQSHPL--------------TPHSSSSASPPATAAPGAS 569
            :...:....:.|.....||   ..|.|::.||              .|....:.|||.......|
 Frog   500 SAYDAATDFAGNAATLLSY---AAAGVKALPLPGGGCTARPLGYYSDPTGWGARSPPQYCTKSGS 561

  Fly   570 AATAAVAGGAGAAGAGGATSATQVMS-AANIYSSIGQ 605
            .......||..||.....|.:.:|.| ||...|.:|:
 Frog   562 VLPCWATGGRMAATNPYLTGSEEVESLAATDRSPLGE 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
org-1NP_001285019.1 TBOX 195..389 CDD:238106 94/197 (48%)
tbr1NP_001072587.1 TBOX 205..398 CDD:238106 94/197 (48%)
T-box_assoc 420..675 CDD:292794 35/210 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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