DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment org-1 and Tbx2

DIOPT Version :9

Sequence 1:NP_001285019.1 Gene:org-1 / 31778 FlyBaseID:FBgn0021767 Length:699 Species:Drosophila melanogaster
Sequence 2:XP_017452798.2 Gene:Tbx2 / 303398 RGDID:1311014 Length:711 Species:Rattus norvegicus


Alignment Length:629 Identity:203/629 - (32%)
Similarity:272/629 - (43%) Gaps:147/629 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 PTAGGTAVTTTSAGGVSASTASKKFKGQHKKDNNSAENGTVKPNSHNISKGESEPVHPSLAQAIV 198
            |...|.|....:|...:.:.......|.|            .|.:|..|....||.........|
  Rat    55 PGLAGAAAAAAAAAAAAEAGLHVSALGPH------------PPAAHLRSLKSLEPEDEVEDDPKV 107

  Fly   199 VLETKALWDQFHAQGTEMIITKTGRRMFPTFQVRIGGLDPHATYICMMDFVPMDDKRYRYAFHNS 263
            .||.|.||||||..||||:|||:||||||.|:||:.|||..|.||.:||.|..||.||:  ||||
  Rat   108 TLEAKELWDQFHKLGTEMVITKSGRRMFPPFKVRVSGLDKKAKYILLMDIVAADDCRYK--FHNS 170

  Fly   264 CWVVAGKADPISPPRIHVHPDSPAVGSNWMKQIVSFDKLKLTNNQLDENGHIILNSMHRYQPRFH 328
            .|:|||||||..|.|:::||||||.|..||.:.|:|.|||||||..|::|..||||||:||||||
  Rat   171 RWMVAGKADPEMPKRMYIHPDSPATGEQWMAKPVAFHKLKLTNNISDKHGFTILNSMHKYQPRFH 235

  Fly   329 LV------YLPPKNASLDENEHSSHFRTFIFPETSFTAVTAYQNQRVTQLKISSNPFAKGFRDDG 387
            :|      .||           .|.|||::||||.|.|||||||.::|||||.:|||||||||.|
  Rat   236 IVRANDILKLP-----------YSTFRTYVFPETDFIAVTAYQNDKITQLKIDNNPFAKGFRDTG 289

  Fly   388 T------NDVT--------------TGGGSSMSSMSHESQAR------------MKQQQQQQQQQ 420
            .      ..:|              ..|..|.:|......||            ::..:.:.:::
  Rat   290 NGRREKRKQLTLPTLRLYEEHCKPERDGAESDASSCDPPPAREPPPSPSAAPSPLRLHRARAEEK 354

  Fly   421 QQQLQQQQQQQQQLKERTAATSNFGLSCSELAIEQQQQQQQQQGVLQLPATPSSSSTSGNSP--- 482
            ........:.::..:||.||.  .|.|.|..|...:..:.::....:.|...|...|.|...   
  Rat   355 PCAADSDPEPERSGEERAAAP--LGRSSSRDASPARLTEPERSRERRSPERGSKEPTEGGGDGPF 417

  Fly   483 DLLGYQMEQQLQQQHQQQQQQQHQSQQQHLHQQHQANQQQSLLQQSQNHTQYGSYH--------H 539
            .|...:.|:...::..:.::...:.::..|         ..|:.|:.:.:..|:.|        |
  Rat   418 SLRSLEKERAEARRKDEGRKDVGEGKEPSL---------APLVVQTDSASPLGAGHLPGLAFSSH 473

  Fly   540 AYQAQV-----QSHPLTPHSSSSA-SPPATAAPGASAATAAVAGGAGAAG-----------AGGA 587
            .:..|.     ...||..|....| .|.|.:|.|.....|:||||.|.:|           |||.
  Rat   474 LHGQQFFGPLGAGQPLFLHPGQFAMGPGAFSAMGMGHLLASVAGGGGNSGGAAPGTAAGLDAGGL 538

  Fly   588 TSATQVMSAA---------NIYSSIGQPYAQEQSNFGAI----YHHNAAAAAAAHYHHGHAHGHA 639
            ..|....|.|         ::.:|.|.|    ...||.:    |.:.|||||||           
  Rat   539 GPAASAASTATPFPFHLSQHMLASQGIP----MPTFGGLFPYPYTYMAAAAAAA----------- 588

  Fly   640 HSHAHAHAHGPYASAYDKLKVSRHAAAAAYGMGATYPS-FYGSA 682
                            ..|..:..|||||...|:...| |.|||
  Rat   589 ----------------SALPATSAAAAAAAAAGSLSRSPFLGSA 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
org-1NP_001285019.1 TBOX 195..389 CDD:238106 119/205 (58%)
Tbx2XP_017452798.2 T-box_TBX2_3-like 103..287 CDD:410314 116/196 (59%)
TBX 305..381 CDD:403708 11/77 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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