DRSC/TRiP Functional Genomics Resources

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Protein Alignment Miga and Miga2

DIOPT Version :9

Sequence 1:NP_001162702.1 Gene:Miga / 31775 FlyBaseID:FBgn0030037 Length:525 Species:Drosophila melanogaster
Sequence 2:XP_006233843.1 Gene:Miga2 / 296623 RGDID:1310887 Length:593 Species:Rattus norvegicus


Alignment Length:559 Identity:184/559 - (32%)
Similarity:285/559 - (50%) Gaps:99/559 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP-----------------PRPPRRARKY------ 60
            |::...:.|||:...|...:::.:..|:||:.                 |.|...|||.      
  Rat    39 RLTPGLRKVLFATALGTVALALAAHQLKRRRRKKKQVGPEMGSEQLGTFPMPILMARKVPSVKKG 103

  Fly    61 -TGRRNRNSMRSPNDLI----SIAGSKASARSGSPVGSTLAYSDRLSMA-SGSIGVGVLGVQNAG 119
             :.||.::.....||.:    ||..||.|..|.|.....:..|...:.| |||       .:..|
  Rat   104 CSSRRVQSPSSKSNDTLSGISSIEPSKHSGSSHSLASMVMVNSSSPTAACSGS-------WETRG 161

  Fly   120 PGSSVVT-QLTAQQLGMMGMEALDTVINFWEDALAAHY--------SPGGLPALLTTAEDS---- 171
            ...||.| ..:|:.|.:.|||..:..:..||.||:...        :||.......|:.::    
  Rat   162 MEESVPTMDGSAESLYVQGMELFEEALQKWEQALSVGQRGDGGSTPTPGDSLQNPDTSSEALSEP 226

  Fly   172 -----EFCREIQNLLEMAYTLQEQ------SELLFLD-QRSVLFREEHSIDEAEEEAGEADDDRR 224
                 ||..::::||..||.|||:      |:.:.|| :|:::.                     
  Rat   227 ESQRREFAEKLESLLHRAYHLQEEFGSTLPSDNMLLDLERTLML--------------------- 270

  Fly   225 SRKSGSVLSRAGSDPNFDSAESFASALDQVADLREFDGFIETSYEEYPL--------FQSALKHH 281
            ....||:..||..:.:..|.:||.||.:....|:         ..||||        ::.||:..
  Rat   271 PLTEGSLCLRADDEDSLTSEDSFFSATELFESLQ---------IGEYPLPLSRPAAAYEEALQLV 326

  Fly   282 DEYTVPCRTIRAELMHCSTDTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKD 346
            .|..|||||:|.||:.|.:|.::||||||||.||:.|.::.....:..:.|||::|.|:...:|.
  Rat   327 KEGKVPCRTLRTELLGCYSDQDFLAKLHCVRQAFEGLLEERNNQVFFGEVGRQMVTGLMTKAEKS 391

  Fly   347 TKEFLVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDLDAPPASVTAVV 411
            .|.||..||:|:||......|...::|||.|.|..|:|:||.||||::|:|:||:.||:||.||:
  Rat   392 PKGFLESYEEMLNYALRPETWATTRLELEGRGVACMSFFDIVLDFILMDAFEDLENPPSSVLAVL 456

  Fly   412 QNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHFYVISEQISPLMAWGFFGPNENLRDIC 476
            :|||||:.||||||.||.|||||||:|:|..|:||:||||.:||.:||::|:||.||...|.::|
  Rat   457 RNRWLSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLGPKPQLSEVC 521

  Fly   477 HYFREELLAFLGDIFSFQKSRFTTIEEFSQDVLQHMQTR 515
            .:|:.:::.:|.|:|.....|:|::...::|:||..:.|
  Rat   522 AFFKHQIVQYLRDMFDLDNVRYTSVPALAEDILQLSRRR 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MigaNP_001162702.1 DUF2217 13..523 CDD:287267 184/559 (33%)
Miga2XP_006233843.1 DUF2217 31..568 CDD:287267 184/559 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341803
Domainoid 1 1.000 270 1.000 Domainoid score I1754
eggNOG 1 0.900 - - E1_KOG3831
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13125
Inparanoid 1 1.050 270 1.000 Inparanoid score I2929
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D172440at33208
OrthoFinder 1 1.000 - - FOG0003203
OrthoInspector 1 1.000 - - otm46414
orthoMCL 1 0.900 - - OOG6_107527
Panther 1 1.100 - - LDO PTHR21508
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2608
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.800

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