DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf2 and tbp

DIOPT Version :10

Sequence 1:NP_001096905.1 Gene:Trf2 / 31773 FlyBaseID:FBgn0261793 Length:1715 Species:Drosophila melanogaster
Sequence 2:NP_956390.1 Gene:tbp / 368882 ZFINID:ZDB-GENE-030616-563 Length:302 Species:Danio rerio


Alignment Length:378 Identity:104/378 - (27%)
Similarity:161/378 - (42%) Gaps:96/378 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1097 NGGLKAASSG--SGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTN---------RQMAGVASTG 1150
            |..|...:.|  |..|.:|.|..:.|.::...  ..|||.....:|         ||.....:..
Zfish     4 NNSLPPFAQGLASPQGAMTPGLPIFSPMMPYG--TGLTPQPVQNSNSLSLLEEQQRQQQQQQAAS 66

  Fly  1151 RMSGQVVGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSKNMFLT--SSEN 1213
            :..|.:||||..|                     |.|........|.....|:..::.|  :...
Zfish    67 QQQGGMVGGSGQT---------------------PQLYHSTQAVSTTTALPGNTPLYTTPLTPMT 110

  Fly  1214 KANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEVAEDEEESSNNAKPIDLHQPIAD 1278
            .....|.||..:|::..                                                
Zfish   111 PITPATPASESSGIVPQ------------------------------------------------ 127

  Fly  1279 NEHELDIVINNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSGRITC 1342
                    :.|:|.:.::||.|.|:.|||:..|.||. :....|.|::|.|.|||.|:|||::.|
Zfish   128 --------LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVC 184

  Fly  1343 TGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPE 1407
            |||.||..:::|||:|||.:.|||||.:||:|:|.|::|:|.:.:.|::......|::.:|||||
Zfish   185 TGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPE 249

  Fly  1408 LHPGVTYKMRDPDPKATLKIFSTGSVTVTAASV-NHVESAIQHIYPLVFDFRK 1459
            |.||:.|:|  ..|:..|.||.:|.|.:|.|.| ..:..|.::|||::..|||
Zfish   250 LFPGLIYRM--IKPRIVLLIFVSGKVVLTGAKVRGEIYEAFENIYPILKGFRK 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf2NP_001096905.1 PHA03418 <644..732 CDD:177646
DUF5401 <891..>1088 CDD:375164
TLF 1283..1456 CDD:239953 72/174 (41%)
tbpNP_956390.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22 5/17 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..81 8/51 (16%)
PLN00062 125..301 CDD:177693 75/234 (32%)
1. /evidence=ECO:0000255 128..204 35/75 (47%)
2. /evidence=ECO:0000255 218..295 29/78 (37%)
Blue background indicates that the domain is not in the aligned region.

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