DRSC/TRiP Functional Genomics Resources

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Protein Alignment Trf2 and tbp-1

DIOPT Version :9

Sequence 1:NP_001096905.1 Gene:Trf2 / 31773 FlyBaseID:FBgn0261793 Length:1715 Species:Drosophila melanogaster
Sequence 2:NP_001370645.1 Gene:tbp-1 / 176054 WormBaseID:WBGene00006542 Length:340 Species:Caenorhabditis elegans


Alignment Length:382 Identity:107/382 - (28%)
Similarity:180/382 - (47%) Gaps:61/382 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1092 PVANLNGGLKAASSGSGVGVVTSGGVVSSAVLANAPRVYLTPSSTFMTNRQMAGVASTGRMSGQV 1156
            |..::.||...|..|.  ..|..|...||.:..:.|...:.|:|                    :
 Worm     6 PAVSMLGGDTPAHGGP--NSVLGGQGPSSILTGHGPNSVMGPNS--------------------I 48

  Fly  1157 VGGSSGTASTAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLATGSKNMFLTSSENKANLPTVA 1221
            :|        .|:|........||:....|||     |.::.:.:...|..|..:.|.|::....
 Worm    49 LG--------PGSVLNPQSIQPMQSQQMHSLQ-----GSSMQMHSHLANSNLNLNINPASVGPDR 100

  Fly  1222 SNGNGLITAKMDLLEEEV-MQSITV--------IDDDDEEKKEVAEDEEESSNNAKPIDLHQPIA 1277
            :.|: ::...:|:....| .|::||        :.|     ::....:..:||.|..:....|.:
 Worm   101 NPGS-VMHHNLDINPPSVAYQNLTVPMTPLAYSVYD-----RDALTHQAPASNIAATMVPATPAS 159

  Fly  1278 DNEHELDI---VINNVVCSFSVGCHLKLREIALQGSNVEYR-RENGMVTMKLRHPYTTASIWSSG 1338
                :|||   .:.|:|.:.::|..|.|::|||...|.||. :....|.|::|.|.|||.|:|||
 Worm   160 ----QLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSG 220

  Fly  1339 RITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENAS 1403
            ::.||||.||..:::|||:|||.:.||||..:|..|.:.|::|:|.:.:.|::......|.:.::
 Worm   221 KMVCTGAKSEEASRLAARKYARIVQKLGFQAKFTEFMVQNMVGSCDVRFPIQLEGLCITHSQFST 285

  Fly  1404 YEPELHPGVTYKMRDPDPKATLKIFSTGSVTVTAASVNH-VESAIQHIYPLVFDFRK 1459
            |||||.||:.|:|  ..|:..|.||.:|.|.:|.|.... ::.|...|||::..|:|
 Worm   286 YEPELFPGLIYRM--VKPRVVLLIFVSGKVVITGAKTKRDIDEAFGQIYPILKGFKK 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trf2NP_001096905.1 GBP_C <967..1068 CDD:303769
coiled coil 1037..1048 CDD:293879
coiled coil 1057..1068 CDD:293879
TLF 1283..1456 CDD:239953 69/177 (39%)
PLN00062 1285..1459 CDD:177693 68/178 (38%)
tbp-1NP_001370645.1 TBP_eukaryotes 165..338 CDD:239952 66/174 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1219067at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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