DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10555 and ss18

DIOPT Version :9

Sequence 1:NP_001285016.1 Gene:CG10555 / 31771 FlyBaseID:FBgn0030034 Length:926 Species:Drosophila melanogaster
Sequence 2:XP_012820418.2 Gene:ss18 / 780399 XenbaseID:XB-GENE-995006 Length:493 Species:Xenopus tropicalis


Alignment Length:535 Identity:165/535 - (30%)
Similarity:190/535 - (35%) Gaps:162/535 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 MMVTPTSTPRGGANMQGGGGGGVPQQVNSAQIQKMLDENCGLIQTIQDFQSMGKAQECMSYHVAL 181
            :|....:.||     |.|.|     ::..|.||||||||..|||.|.|:|:.||..||..|...|
 Frog    76 IMSVAFAAPR-----QRGKG-----EITPAAIQKMLDENNHLIQCIMDYQNKGKTSECSQYQQML 130

  Fly   182 HRNLVYLAQLADPAMNISQILPPPHILQTQAMQQGGQQTPPTGPHGM-LGGPPQ---QQQQPGQG 242
            |.||||||.:||...|...:|   ..|.||.|        |.||.|| ..||||   ....|.:|
 Frog   131 HTNLVYLATIADSNQNTQPLL---SALPTQNM--------PMGPAGMNQSGPPQPPRAHNMPSEG 184

  Fly   243 PVPGQPGQGPPQMGMQQHGGDPQGPPVQMPPYGAQQQPQPHPGLPPGAQQQSQQQQQQQQQQQQQ 307
            .|.|  |...|.|..|.:|        |||  |....|...||                      
 Frog   185 MVGG--GPSAPHMQNQMNG--------QMP--GPNHMPMQGPG---------------------- 215

  Fly   308 QQQQQQQQQAAAAAAAAAAAAAVAAGQQQGPQVSQAGPQQQQQQ----QHPVYRNAQGQGQPGAG 368
                                    .||...|..|...|......    .|.|         |.:.
 Frog   216 ------------------------PGQHNMPNSSMNMPSNNHGSMGGYNHSV---------PSSQ 247

  Fly   369 QVPGQGQGPV---QSVINPNAAPNQQ-RPNNGPLSGPQNPQQQQQQPQPG----GQQPP------ 419
            .:|.|.|..:   ||:.|....||.. :||..|:...|.|.||...||.|    |||||      
 Frog   248 NIPAQNQMSMSQGQSMGNYGPRPNMNIQPNQAPMIHQQPPSQQYNMPQGGQHYQGQQPPMGIMGQ 312

  Fly   420 ----NQQQQQQQTGPGGPGPQPGAGGPGVPPPQSPYRVSYQQQQQQHSHYPGYPPQPQTQYQPQG 480
                |....|:|..|..| ||.|      ||.|...:..|..:|..|. ..|.|.....||.|.|
 Frog   313 VNQGNHMIGQRQIPPYRP-PQQG------PPQQYSGQEEYYGEQYSHG-AQGTPEGINQQYYPDG 369

  Fly   481 AYPYG---P--PTQGYGPPPPGPPNAAQGGYHHGPAGAATGASGHGYQPNAGAGQGP-PPGAYPP 539
            ...||   |  |.|||..|   ..:::|..|..|.|         .|.....:.||| ....|||
 Frog   370 HNDYGYQQPSYPEQGYDRP---YEDSSQHYYEGGNA---------QYSQQQESYQGPQQQQGYPP 422

  Fly   540 PP---GSQQVPPVPGQQ------QPPPGPPPPGQPPTGGQQQPPPGPPQSQYGPPPPQNSAGGPP 595
            ..   ..||.  .||||      |..|||..|..|....||.....|  :|.|||.||...    
 Frog   423 QQQQYAGQQA--YPGQQQGYAPSQSGPGPQYPNYPQGQSQQYVQYRP--TQPGPPQPQQQR---- 479

  Fly   596 PMGYAGYPPNPGQYG 610
            |.||     :.||||
 Frog   480 PYGY-----DQGQYG 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10555NP_001285016.1 SSXT 141..200 CDD:282835 31/58 (53%)
ss18XP_012820418.2 SSXT 90..149 CDD:398622 32/63 (51%)
PABP-1234 <128..293 CDD:130689 64/242 (26%)
Med15 146..>486 CDD:312941 125/450 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9773
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1442230at2759
OrthoFinder 1 1.000 - - FOG0001535
OrthoInspector 1 1.000 - - otm47479
Panther 1 1.100 - - O PTHR23107
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4299
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.050

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