DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10555 and Ss18

DIOPT Version :9

Sequence 1:NP_001285016.1 Gene:CG10555 / 31771 FlyBaseID:FBgn0030034 Length:926 Species:Drosophila melanogaster
Sequence 2:NP_001094370.1 Gene:Ss18 / 361295 RGDID:1311919 Length:418 Species:Rattus norvegicus


Alignment Length:545 Identity:176/545 - (32%)
Similarity:198/545 - (36%) Gaps:168/545 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 ANMQGGGGGGVPQQVNSAQIQKMLDENCGLIQTIQDFQSMGKAQECMSYHVALHRNLVYLAQLAD 193
            |..|.|.|     ::..|.||||||||..|||.|.|:|:.|||.||..|...||.||||||.:||
  Rat     7 APRQRGKG-----EITPAAIQKMLDENNHLIQCIMDYQNKGKASECSQYQQILHTNLVYLATIAD 66

  Fly   194 PAMNISQILPPPHILQTQAMQQGGQQTPPTGPHGMLGG----PPQQQQQPGQGPVPGQPGQGPPQ 254
            ...|:..:||.|           ..|..|.||.||...    ||:....|..|.|    |.|||.
  Rat    67 SNQNMQSLLPAP-----------PTQNVPMGPGGMSQSGPPPPPRSHSMPSDGMV----GGGPPA 116

  Fly   255 MGMQ-QHGGDPQGPPVQMPPYGAQQQPQPHPGLPPGAQQQSQQQQQQQQQQQQQQQQQQQQQQAA 318
            ..|| |..|...||. .||..|            ||..|.|........                
  Rat   117 PHMQNQMNGQMPGPN-HMPMQG------------PGPSQLSMTNSSMNM---------------- 152

  Fly   319 AAAAAAAAAAAVAAGQQQGPQVSQAGPQQQQQQQHPVYRNAQGQGQPGAGQVPGQGQGPVQSVIN 383
                 .:::.....|.......||:.|.|.|.        ...||||.....|           .
  Rat   153 -----PSSSHGSMGGYNHSVPSSQSMPVQNQM--------TMSQGQPMGNYGP-----------R 193

  Fly   384 PNAAPNQQRPNNGPLSGPQNPQQQQQQPQPGGQQPPNQQQQQQQTGPGGPGPQPGAGG------- 441
            ||.  |.| ||.||:...|.|.||...| |||     .|..|.|..|.|...|...|.       
  Rat   194 PNM--NMQ-PNQGPMMHQQPPSQQYSMP-PGG-----AQHYQGQQAPMGLMGQVNQGSHMMGQRQ 249

  Fly   442 --PGVPPPQSPYRVSYQQQQ----QQHSHYPGYPPQPQT-QYQPQGAYPYG---P--PTQGYGPP 494
              |..||.|.|.: .|..|:    .|:||....||:... ||.|.|...||   |  |.|||..|
  Rat   250 MPPYRPPQQGPPQ-QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRP 313

  Fly   495 -PPGPPNAAQGGYHHGPAGAATGASGHGYQPNAGAGQGPPP-GAYPPPPGSQQVPPVPGQQQPPP 557
             ....|:..:|           |.|.:|.|.:  |.||||| ..|||            |||..|
  Rat   314 YEESSPHYCEG-----------GNSQYGQQQD--AYQGPPPQQGYPP------------QQQQYP 353

  Fly   558 GPPPPGQPPTGGQQQPPPGPPQSQYGPPPPQNSAGGPPPMGYAGYPPNPG-QYGQAGAGGGPPPS 621
            |            ||..||..|. |||     :.|||.|. |..||...| |||           
  Rat   354 G------------QQGYPGQQQG-YGP-----TQGGPGPQ-YPNYPQGQGQQYG----------- 388

  Fly   622 GYWP--PPPPTSSAQSPYQAYQQQQ 644
            ||.|  |.||....|.|| .|.|.|
  Rat   389 GYRPTQPGPPQPPQQRPY-GYDQGQ 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10555NP_001285016.1 SSXT 141..200 CDD:282835 32/58 (55%)
Ss18NP_001094370.1 SSXT 14..73 CDD:282835 33/63 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 66 1.000 Domainoid score I9672
eggNOG 1 0.900 - - E1_KOG3227
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1442230at2759
OrthoFinder 1 1.000 - - FOG0001535
OrthoInspector 1 1.000 - - otm44433
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23107
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.920

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